Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0587 and Dshi_0588 are separated by 77 nucleotides Dshi_0588 and Dshi_0589 overlap by 4 nucleotides Dshi_0589 and Dshi_0590 are separated by 33 nucleotides Dshi_0590 and Dshi_0591 are separated by 9 nucleotides
Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498
_0586
Dshi_0587: Dshi_0587 - putative transcriptional regulator, ArsR family (RefSeq), at 578,470 to 578,814
_0587
Dshi_0588: Dshi_0588 - uracil-DNA glycosylase superfamily (RefSeq), at 578,892 to 579,500
_0588
Dshi_0589: Dshi_0589 - hypothetical protein (RefSeq), at 579,497 to 580,282
_0589
Dshi_0590: Dshi_0590 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 580,316 to 581,251
_0590
Dshi_0591: Dshi_0591 - rod shape-determining protein RodA (RefSeq), at 581,261 to 582,400
_0591
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 578.584 kb on - strand, within Dshi_0587 at 578.628 kb on + strand, within Dshi_0587 at 578.701 kb on - strand, within Dshi_0587 at 578.884 kb on - strand at 579.090 kb on - strand, within Dshi_0588 at 579.109 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.235 kb on + strand, within Dshi_0588 at 579.322 kb on + strand, within Dshi_0588 at 579.418 kb on + strand, within Dshi_0588 at 579.426 kb on - strand, within Dshi_0588 at 579.427 kb on - strand, within Dshi_0588 at 579.488 kb on + strand at 579.488 kb on + strand at 579.488 kb on + strand at 579.522 kb on - strand at 579.633 kb on - strand, within Dshi_0589 at 579.645 kb on + strand, within Dshi_0589 at 579.655 kb on - strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.738 kb on + strand, within Dshi_0589 at 579.887 kb on - strand, within Dshi_0589 at 579.994 kb on + strand, within Dshi_0589 at 580.040 kb on + strand, within Dshi_0589 at 580.068 kb on + strand, within Dshi_0589 at 580.082 kb on - strand, within Dshi_0589 at 580.129 kb on - strand, within Dshi_0589 at 580.195 kb on - strand, within Dshi_0589 at 580.244 kb on - strand at 580.255 kb on - strand at 580.440 kb on + strand, within Dshi_0590 at 580.443 kb on - strand, within Dshi_0590 at 580.523 kb on - strand, within Dshi_0590 at 580.815 kb on + strand, within Dshi_0590 at 580.899 kb on + strand, within Dshi_0590 at 580.928 kb on + strand, within Dshi_0590 at 580.933 kb on + strand, within Dshi_0590 at 580.970 kb on - strand, within Dshi_0590 at 580.991 kb on + strand, within Dshi_0590 at 580.991 kb on + strand, within Dshi_0590 at 580.999 kb on - strand, within Dshi_0590 at 581.148 kb on + strand, within Dshi_0590 at 581.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 578,584 - Dshi_0587 0.33 +0.9 578,628 + Dshi_0587 0.46 +0.2 578,701 - Dshi_0587 0.67 +0.4 578,884 - +0.6 579,090 - Dshi_0588 0.33 -0.4 579,109 - Dshi_0588 0.36 -1.6 579,232 - Dshi_0588 0.56 +0.8 579,232 - Dshi_0588 0.56 -0.9 579,232 - Dshi_0588 0.56 -1.8 579,232 - Dshi_0588 0.56 -1.2 579,235 + Dshi_0588 0.56 -0.1 579,322 + Dshi_0588 0.71 +0.0 579,418 + Dshi_0588 0.86 -0.4 579,426 - Dshi_0588 0.88 +1.1 579,427 - Dshi_0588 0.88 -2.1 579,488 + +2.3 579,488 + -0.1 579,488 + -1.3 579,522 - +0.8 579,633 - Dshi_0589 0.17 +0.5 579,645 + Dshi_0589 0.19 +0.8 579,655 - Dshi_0589 0.20 +0.2 579,675 + Dshi_0589 0.23 +1.4 579,675 + Dshi_0589 0.23 -0.2 579,738 + Dshi_0589 0.31 -1.8 579,887 - Dshi_0589 0.50 +0.9 579,994 + Dshi_0589 0.63 -0.7 580,040 + Dshi_0589 0.69 +0.1 580,068 + Dshi_0589 0.73 -0.3 580,082 - Dshi_0589 0.74 -0.3 580,129 - Dshi_0589 0.80 -1.2 580,195 - Dshi_0589 0.89 +0.8 580,244 - +0.4 580,255 - -2.1 580,440 + Dshi_0590 0.13 -1.2 580,443 - Dshi_0590 0.14 -0.4 580,523 - Dshi_0590 0.22 -0.9 580,815 + Dshi_0590 0.53 -0.2 580,899 + Dshi_0590 0.62 -0.2 580,928 + Dshi_0590 0.65 -0.9 580,933 + Dshi_0590 0.66 -0.4 580,970 - Dshi_0590 0.70 -0.4 580,991 + Dshi_0590 0.72 -0.2 580,991 + Dshi_0590 0.72 -0.4 580,999 - Dshi_0590 0.73 +0.0 581,148 + Dshi_0590 0.89 -3.5 581,181 - -2.9
Or see this region's nucleotide sequence