Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0497

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0496 and Dshi_0497 are separated by 99 nucleotidesDshi_0497 and Dshi_0498 overlap by 4 nucleotidesDshi_0498 and Dshi_0499 overlap by 4 nucleotides Dshi_0496: Dshi_0496 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 480,704 to 482,722 _0496 Dshi_0497: Dshi_0497 - hypothetical protein (RefSeq), at 482,822 to 483,556 _0497 Dshi_0498: Dshi_0498 - hypothetical protein (RefSeq), at 483,553 to 484,110 _0498 Dshi_0499: Dshi_0499 - hypothetical protein (RefSeq), at 484,107 to 485,120 _0499 Position (kb) 482 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 481.977 kb on + strand, within Dshi_0496at 481.985 kb on - strand, within Dshi_0496at 481.985 kb on - strand, within Dshi_0496at 482.061 kb on + strand, within Dshi_0496at 482.108 kb on - strand, within Dshi_0496at 482.126 kb on - strand, within Dshi_0496at 482.139 kb on + strand, within Dshi_0496at 482.147 kb on + strand, within Dshi_0496at 482.180 kb on + strand, within Dshi_0496at 482.190 kb on + strand, within Dshi_0496at 482.280 kb on + strand, within Dshi_0496at 482.329 kb on + strand, within Dshi_0496at 482.330 kb on + strand, within Dshi_0496at 482.336 kb on + strand, within Dshi_0496at 482.349 kb on - strand, within Dshi_0496at 482.351 kb on + strand, within Dshi_0496at 482.351 kb on + strand, within Dshi_0496at 482.373 kb on - strand, within Dshi_0496at 482.383 kb on - strand, within Dshi_0496at 482.511 kb on + strand, within Dshi_0496at 482.519 kb on - strand, within Dshi_0496at 482.540 kb on + strandat 482.558 kb on + strandat 482.564 kb on + strandat 482.564 kb on + strandat 482.564 kb on + strandat 482.606 kb on - strandat 482.612 kb on - strandat 482.637 kb on + strandat 482.689 kb on - strandat 482.695 kb on - strandat 482.755 kb on - strandat 482.769 kb on - strandat 482.776 kb on + strandat 482.776 kb on + strandat 482.776 kb on + strandat 482.776 kb on - strandat 482.784 kb on - strandat 482.784 kb on - strandat 482.784 kb on - strandat 482.816 kb on + strandat 482.824 kb on - strandat 482.859 kb on - strandat 482.871 kb on + strandat 482.879 kb on - strandat 482.895 kb on - strandat 482.900 kb on - strand, within Dshi_0497at 482.922 kb on - strand, within Dshi_0497at 482.934 kb on + strand, within Dshi_0497at 482.939 kb on + strand, within Dshi_0497at 482.961 kb on - strand, within Dshi_0497at 482.996 kb on - strand, within Dshi_0497at 483.001 kb on - strand, within Dshi_0497at 483.059 kb on + strand, within Dshi_0497at 483.094 kb on - strand, within Dshi_0497at 483.176 kb on - strand, within Dshi_0497at 483.205 kb on + strand, within Dshi_0497at 483.226 kb on + strand, within Dshi_0497at 483.274 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on - strand, within Dshi_0497at 483.395 kb on + strand, within Dshi_0497at 483.396 kb on - strand, within Dshi_0497at 483.398 kb on + strand, within Dshi_0497at 483.403 kb on + strand, within Dshi_0497at 483.424 kb on - strand, within Dshi_0497at 483.429 kb on - strand, within Dshi_0497at 483.436 kb on + strand, within Dshi_0497at 483.436 kb on - strand, within Dshi_0497at 483.545 kb on - strandat 483.569 kb on + strandat 483.620 kb on + strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.755 kb on + strand, within Dshi_0498at 483.758 kb on - strand, within Dshi_0498at 483.813 kb on - strand, within Dshi_0498at 483.906 kb on + strand, within Dshi_0498at 483.915 kb on - strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.974 kb on + strand, within Dshi_0498at 483.974 kb on + strand, within Dshi_0498at 483.974 kb on - strand, within Dshi_0498at 483.974 kb on - strand, within Dshi_0498at 483.976 kb on + strand, within Dshi_0498at 483.982 kb on - strand, within Dshi_0498at 483.982 kb on - strand, within Dshi_0498at 484.044 kb on + strand, within Dshi_0498at 484.053 kb on - strand, within Dshi_0498at 484.066 kb on + strandat 484.066 kb on + strandat 484.067 kb on + strandat 484.068 kb on - strandat 484.101 kb on + strandat 484.115 kb on + strandat 484.115 kb on + strandat 484.115 kb on + strandat 484.156 kb on - strandat 484.183 kb on + strandat 484.191 kb on - strandat 484.227 kb on + strand, within Dshi_0499at 484.245 kb on - strand, within Dshi_0499at 484.268 kb on + strand, within Dshi_0499at 484.323 kb on + strand, within Dshi_0499at 484.373 kb on + strand, within Dshi_0499at 484.378 kb on + strand, within Dshi_0499at 484.378 kb on - strand, within Dshi_0499at 484.401 kb on + strand, within Dshi_0499at 484.402 kb on + strand, within Dshi_0499at 484.402 kb on + strand, within Dshi_0499at 484.405 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.415 kb on + strand, within Dshi_0499at 484.458 kb on + strand, within Dshi_0499at 484.467 kb on + strand, within Dshi_0499at 484.480 kb on - strand, within Dshi_0499at 484.497 kb on + strand, within Dshi_0499at 484.501 kb on + strand, within Dshi_0499at 484.508 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.526 kb on - strand, within Dshi_0499at 484.549 kb on + strand, within Dshi_0499

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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481,977 + Dshi_0496 0.63 -0.3
481,985 - Dshi_0496 0.63 +1.3
481,985 - Dshi_0496 0.63 -0.8
482,061 + Dshi_0496 0.67 +0.2
482,108 - Dshi_0496 0.70 -0.1
482,126 - Dshi_0496 0.70 -1.3
482,139 + Dshi_0496 0.71 +0.4
482,147 + Dshi_0496 0.71 -1.4
482,180 + Dshi_0496 0.73 -1.9
482,190 + Dshi_0496 0.74 -2.8
482,280 + Dshi_0496 0.78 -1.7
482,329 + Dshi_0496 0.80 -1.4
482,330 + Dshi_0496 0.81 +1.1
482,336 + Dshi_0496 0.81 -0.3
482,349 - Dshi_0496 0.81 -0.4
482,351 + Dshi_0496 0.82 -1.4
482,351 + Dshi_0496 0.82 -0.7
482,373 - Dshi_0496 0.83 +0.3
482,383 - Dshi_0496 0.83 +0.2
482,511 + Dshi_0496 0.89 -0.8
482,519 - Dshi_0496 0.90 -1.2
482,540 + -1.1
482,558 + -2.0
482,564 + +1.2
482,564 + -1.3
482,564 + -1.0
482,606 - +0.4
482,612 - -0.5
482,637 + -0.2
482,689 - -0.4
482,695 - -1.5
482,755 - -0.5
482,769 - +0.5
482,776 + +0.8
482,776 + -0.2
482,776 + -2.1
482,776 - -0.0
482,784 - +0.9
482,784 - +1.8
482,784 - +0.4
482,816 + +0.7
482,824 - +0.3
482,859 - -0.6
482,871 + +0.0
482,879 - +0.9
482,895 - -0.7
482,900 - Dshi_0497 0.11 -1.1
482,922 - Dshi_0497 0.14 -1.9
482,934 + Dshi_0497 0.15 -0.5
482,939 + Dshi_0497 0.16 -0.4
482,961 - Dshi_0497 0.19 -1.7
482,996 - Dshi_0497 0.24 -0.6
483,001 - Dshi_0497 0.24 -0.0
483,059 + Dshi_0497 0.32 -0.0
483,094 - Dshi_0497 0.37 -0.6
483,176 - Dshi_0497 0.48 -1.2
483,205 + Dshi_0497 0.52 +1.0
483,226 + Dshi_0497 0.55 -0.4
483,274 + Dshi_0497 0.61 -0.0
483,344 + Dshi_0497 0.71 -1.0
483,344 + Dshi_0497 0.71 +0.6
483,344 - Dshi_0497 0.71 -1.0
483,395 + Dshi_0497 0.78 -1.5
483,396 - Dshi_0497 0.78 -0.6
483,398 + Dshi_0497 0.78 -0.4
483,403 + Dshi_0497 0.79 -1.3
483,424 - Dshi_0497 0.82 -0.8
483,429 - Dshi_0497 0.83 -0.2
483,436 + Dshi_0497 0.84 +0.2
483,436 - Dshi_0497 0.84 -0.0
483,545 - -0.0
483,569 + +0.8
483,620 + Dshi_0498 0.12 -0.3
483,628 - Dshi_0498 0.13 +0.3
483,628 - Dshi_0498 0.13 -0.2
483,755 + Dshi_0498 0.36 -1.7
483,758 - Dshi_0498 0.37 -0.8
483,813 - Dshi_0498 0.47 +0.0
483,906 + Dshi_0498 0.63 +0.1
483,915 - Dshi_0498 0.65 -1.7
483,966 + Dshi_0498 0.74 +0.4
483,966 + Dshi_0498 0.74 -0.9
483,966 + Dshi_0498 0.74 -1.2
483,966 + Dshi_0498 0.74 +0.9
483,966 + Dshi_0498 0.74 -0.1
483,974 + Dshi_0498 0.75 -1.0
483,974 + Dshi_0498 0.75 -0.2
483,974 - Dshi_0498 0.75 +1.0
483,974 - Dshi_0498 0.75 -0.3
483,976 + Dshi_0498 0.76 -2.2
483,982 - Dshi_0498 0.77 -0.1
483,982 - Dshi_0498 0.77 -1.5
484,044 + Dshi_0498 0.88 +0.5
484,053 - Dshi_0498 0.90 -0.0
484,066 + -0.3
484,066 + +1.3
484,067 + -0.7
484,068 - +0.3
484,101 + -0.8
484,115 + -1.6
484,115 + -1.3
484,115 + +0.8
484,156 - -0.9
484,183 + -0.4
484,191 - -2.1
484,227 + Dshi_0499 0.12 +2.5
484,245 - Dshi_0499 0.14 -0.3
484,268 + Dshi_0499 0.16 +0.2
484,323 + Dshi_0499 0.21 -0.3
484,373 + Dshi_0499 0.26 +1.2
484,378 + Dshi_0499 0.27 -1.4
484,378 - Dshi_0499 0.27 +0.1
484,401 + Dshi_0499 0.29 -1.5
484,402 + Dshi_0499 0.29 -0.9
484,402 + Dshi_0499 0.29 -0.3
484,405 - Dshi_0499 0.29 +0.1
484,407 - Dshi_0499 0.30 -0.4
484,407 - Dshi_0499 0.30 +0.4
484,407 - Dshi_0499 0.30 -0.4
484,415 + Dshi_0499 0.30 -1.5
484,458 + Dshi_0499 0.35 -0.8
484,467 + Dshi_0499 0.36 +0.0
484,480 - Dshi_0499 0.37 -0.2
484,497 + Dshi_0499 0.38 -0.7
484,501 + Dshi_0499 0.39 +0.4
484,508 - Dshi_0499 0.40 +0.4
484,509 - Dshi_0499 0.40 +0.4
484,509 - Dshi_0499 0.40 -0.1
484,509 - Dshi_0499 0.40 -0.8
484,509 - Dshi_0499 0.40 -0.9
484,526 - Dshi_0499 0.41 -1.4
484,549 + Dshi_0499 0.44 +0.1

Or see this region's nucleotide sequence