Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0248 and Dshi_0249 are separated by 335 nucleotides Dshi_0249 and Dshi_0250 are separated by 45 nucleotides Dshi_0250 and Dshi_0251 are separated by 3 nucleotides
Dshi_0248: Dshi_0248 - Quinone oxidoreductase putative PIG3 (RefSeq), at 244,793 to 245,779
_0248
Dshi_0249: Dshi_0249 - acriflavin resistance protein (RefSeq), at 246,115 to 246,699
_0249
Dshi_0250: Dshi_0250 - acriflavin resistance protein (RefSeq), at 246,745 to 249,237
_0250
Dshi_0251: Dshi_0251 - efflux transporter, RND family, MFP subunit (RefSeq), at 249,241 to 250,392
_0251
Position (kb) 246
247
248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 245.917 kb on + strand at 245.980 kb on + strand at 246.045 kb on + strand at 246.156 kb on - strand at 246.205 kb on - strand, within Dshi_0249 at 246.253 kb on - strand, within Dshi_0249 at 246.301 kb on + strand, within Dshi_0249 at 246.340 kb on + strand, within Dshi_0249 at 246.348 kb on - strand, within Dshi_0249 at 246.417 kb on + strand, within Dshi_0249 at 246.459 kb on - strand, within Dshi_0249 at 246.508 kb on + strand, within Dshi_0249 at 246.675 kb on + strand at 246.715 kb on - strand at 246.717 kb on + strand at 246.725 kb on - strand at 246.788 kb on + strand at 246.798 kb on + strand at 246.811 kb on - strand at 246.811 kb on - strand at 246.825 kb on + strand at 246.900 kb on + strand at 246.910 kb on + strand at 246.950 kb on - strand at 247.002 kb on + strand, within Dshi_0250 at 247.002 kb on + strand, within Dshi_0250 at 247.221 kb on + strand, within Dshi_0250 at 247.229 kb on - strand, within Dshi_0250 at 247.273 kb on + strand, within Dshi_0250 at 247.274 kb on + strand, within Dshi_0250 at 247.338 kb on - strand, within Dshi_0250 at 247.360 kb on + strand, within Dshi_0250 at 247.392 kb on + strand, within Dshi_0250 at 247.501 kb on - strand, within Dshi_0250 at 247.524 kb on + strand, within Dshi_0250 at 247.678 kb on - strand, within Dshi_0250 at 247.795 kb on + strand, within Dshi_0250 at 247.863 kb on - strand, within Dshi_0250 at 248.051 kb on + strand, within Dshi_0250 at 248.251 kb on + strand, within Dshi_0250 at 248.366 kb on + strand, within Dshi_0250 at 248.374 kb on - strand, within Dshi_0250 at 248.432 kb on - strand, within Dshi_0250 at 248.483 kb on - strand, within Dshi_0250 at 248.521 kb on + strand, within Dshi_0250 at 248.535 kb on - strand, within Dshi_0250 at 248.588 kb on + strand, within Dshi_0250 at 248.666 kb on + strand, within Dshi_0250 at 248.693 kb on - strand, within Dshi_0250 at 248.818 kb on + strand, within Dshi_0250 at 248.861 kb on + strand, within Dshi_0250 at 248.870 kb on + strand, within Dshi_0250 at 248.960 kb on + strand, within Dshi_0250 at 249.026 kb on - strand at 249.078 kb on + strand at 249.090 kb on + strand at 249.201 kb on - strand at 249.480 kb on + strand, within Dshi_0251 at 249.725 kb on - strand, within Dshi_0251 at 249.731 kb on + strand, within Dshi_0251 at 249.939 kb on - strand, within Dshi_0251
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 245,917 + -0.3 245,980 + -0.0 246,045 + -0.1 246,156 - +1.0 246,205 - Dshi_0249 0.15 +0.6 246,253 - Dshi_0249 0.24 -0.0 246,301 + Dshi_0249 0.32 -0.0 246,340 + Dshi_0249 0.38 +0.4 246,348 - Dshi_0249 0.40 -0.4 246,417 + Dshi_0249 0.52 -0.9 246,459 - Dshi_0249 0.59 +0.9 246,508 + Dshi_0249 0.67 +0.8 246,675 + -0.5 246,715 - +0.1 246,717 + -0.3 246,725 - -2.0 246,788 + +0.6 246,798 + +0.3 246,811 - -0.9 246,811 - -0.5 246,825 + -0.5 246,900 + -0.2 246,910 + +0.1 246,950 - +0.1 247,002 + Dshi_0250 0.10 -0.7 247,002 + Dshi_0250 0.10 -0.7 247,221 + Dshi_0250 0.19 -0.7 247,229 - Dshi_0250 0.19 +0.2 247,273 + Dshi_0250 0.21 -0.3 247,274 + Dshi_0250 0.21 -1.5 247,338 - Dshi_0250 0.24 -0.2 247,360 + Dshi_0250 0.25 -0.4 247,392 + Dshi_0250 0.26 +0.7 247,501 - Dshi_0250 0.30 +1.3 247,524 + Dshi_0250 0.31 -0.7 247,678 - Dshi_0250 0.37 +0.0 247,795 + Dshi_0250 0.42 +0.8 247,863 - Dshi_0250 0.45 -0.3 248,051 + Dshi_0250 0.52 -1.8 248,251 + Dshi_0250 0.60 -0.4 248,366 + Dshi_0250 0.65 +0.6 248,374 - Dshi_0250 0.65 -1.3 248,432 - Dshi_0250 0.68 -0.0 248,483 - Dshi_0250 0.70 -0.7 248,521 + Dshi_0250 0.71 +0.4 248,535 - Dshi_0250 0.72 -0.5 248,588 + Dshi_0250 0.74 -1.2 248,666 + Dshi_0250 0.77 -0.7 248,693 - Dshi_0250 0.78 -0.4 248,818 + Dshi_0250 0.83 -0.2 248,861 + Dshi_0250 0.85 -1.0 248,870 + Dshi_0250 0.85 -0.5 248,960 + Dshi_0250 0.89 -0.5 249,026 - -1.8 249,078 + -1.6 249,090 + -1.8 249,201 - +0.2 249,480 + Dshi_0251 0.21 -0.0 249,725 - Dshi_0251 0.42 -0.2 249,731 + Dshi_0251 0.43 -2.0 249,939 - Dshi_0251 0.61 +0.4
Or see this region's nucleotide sequence