Strain Fitness in Shewanella oneidensis MR-1 around SO0718

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0715 and SO0716 overlap by 1 nucleotidesSO0716 and SO0717 overlap by 4 nucleotidesSO0717 and SO0718 are separated by 94 nucleotidesSO0718 and SO0719 are separated by 140 nucleotides SO0715: SO0715 - oxidoreductase, molybdopterin-binding (NCBI ptt file), at 731,746 to 732,972 SO0715 SO0716: SO0716 - monoheme cytochrome c, putative (NCBI ptt file), at 732,972 to 733,355 SO0716 SO0717: SO0717 - monoheme cytochrome c (NCBI ptt file), at 733,352 to 733,687 SO0717 SO0718: SO0718 - conserved hypothetical protein (NCBI ptt file), at 733,782 to 734,261 SO0718 SO0719: SO0719 - TonB-dependent receptor, putative (NCBI ptt file), at 734,402 to 736,645 SO0719 Position (kb) 733 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 732.839 kb on + strand, within SO0715at 732.883 kb on + strandat 732.891 kb on - strandat 732.933 kb on + strandat 732.933 kb on + strandat 732.941 kb on - strandat 732.958 kb on - strandat 732.964 kb on - strandat 733.010 kb on + strandat 733.170 kb on + strand, within SO0716at 733.219 kb on + strand, within SO0716at 733.227 kb on - strand, within SO0716at 733.241 kb on + strand, within SO0716at 733.271 kb on + strand, within SO0716at 733.271 kb on + strand, within SO0716at 733.283 kb on + strand, within SO0716at 733.450 kb on + strand, within SO0717at 733.457 kb on + strand, within SO0717at 733.468 kb on - strand, within SO0717at 733.571 kb on + strand, within SO0717at 733.603 kb on + strand, within SO0717at 733.645 kb on + strand, within SO0717at 733.645 kb on + strand, within SO0717at 733.645 kb on + strand, within SO0717at 733.653 kb on - strand, within SO0717at 733.655 kb on + strandat 733.655 kb on + strandat 733.677 kb on + strandat 733.750 kb on - strandat 733.855 kb on + strand, within SO0718at 733.900 kb on - strand, within SO0718at 733.909 kb on + strand, within SO0718at 733.919 kb on + strand, within SO0718at 733.919 kb on + strand, within SO0718at 733.927 kb on - strand, within SO0718at 733.927 kb on - strand, within SO0718at 733.927 kb on - strand, within SO0718at 733.975 kb on + strand, within SO0718at 733.975 kb on + strand, within SO0718at 733.977 kb on + strand, within SO0718at 733.985 kb on - strand, within SO0718at 733.994 kb on + strand, within SO0718at 734.081 kb on + strand, within SO0718at 734.089 kb on - strand, within SO0718at 734.106 kb on - strand, within SO0718at 734.106 kb on - strand, within SO0718at 734.137 kb on + strand, within SO0718at 734.189 kb on + strand, within SO0718at 734.191 kb on + strand, within SO0718at 734.201 kb on + strand, within SO0718at 734.234 kb on + strandat 734.234 kb on + strandat 734.234 kb on + strandat 734.234 kb on + strandat 734.236 kb on + strandat 734.271 kb on - strandat 734.290 kb on - strandat 734.323 kb on + strandat 734.323 kb on + strandat 734.331 kb on - strandat 734.331 kb on - strandat 734.331 kb on - strandat 734.433 kb on - strandat 734.450 kb on - strandat 734.475 kb on + strandat 734.595 kb on - strandat 734.608 kb on - strandat 734.624 kb on + strandat 734.624 kb on + strandat 734.632 kb on - strand, within SO0719at 734.632 kb on - strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strandat 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.796 kb on + strand, within SO0719at 734.806 kb on + strand, within SO0719at 734.814 kb on - strand, within SO0719at 734.900 kb on + strand, within SO0719at 734.901 kb on + strand, within SO0719at 734.909 kb on - strand, within SO0719at 734.913 kb on + strand, within SO0719at 735.010 kb on - strand, within SO0719at 735.164 kb on + strand, within SO0719at 735.179 kb on - strand, within SO0719at 735.198 kb on + strand, within SO0719at 735.215 kb on + strand, within SO0719at 735.246 kb on - strand, within SO0719

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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732,839 + SO0715 0.89 +0.2
732,883 + -0.5
732,891 - +1.0
732,933 + -1.1
732,933 + -0.1
732,941 - +1.5
732,958 - -0.6
732,964 - -0.7
733,010 + -0.0
733,170 + SO0716 0.52 +0.8
733,219 + SO0716 0.64 +0.5
733,227 - SO0716 0.66 -1.7
733,241 + SO0716 0.70 +0.2
733,271 + SO0716 0.78 -0.2
733,271 + SO0716 0.78 +0.8
733,283 + SO0716 0.81 -0.0
733,450 + SO0717 0.29 +0.2
733,457 + SO0717 0.31 +0.3
733,468 - SO0717 0.35 +0.4
733,571 + SO0717 0.65 -0.7
733,603 + SO0717 0.75 +0.3
733,645 + SO0717 0.87 +0.3
733,645 + SO0717 0.87 +1.0
733,645 + SO0717 0.87 +0.0
733,653 - SO0717 0.90 +0.1
733,655 + -2.2
733,655 + +0.7
733,677 + -0.2
733,750 - -1.5
733,855 + SO0718 0.15 -0.2
733,900 - SO0718 0.25 +0.2
733,909 + SO0718 0.26 +0.7
733,919 + SO0718 0.29 +0.7
733,919 + SO0718 0.29 +0.9
733,927 - SO0718 0.30 +0.8
733,927 - SO0718 0.30 +0.6
733,927 - SO0718 0.30 -0.9
733,975 + SO0718 0.40 +1.4
733,975 + SO0718 0.40 +0.3
733,977 + SO0718 0.41 -0.4
733,985 - SO0718 0.42 +0.2
733,994 + SO0718 0.44 +1.9
734,081 + SO0718 0.62 +0.2
734,089 - SO0718 0.64 -0.1
734,106 - SO0718 0.68 +1.3
734,106 - SO0718 0.68 +0.5
734,137 + SO0718 0.74 +0.0
734,189 + SO0718 0.85 +0.3
734,191 + SO0718 0.85 +0.6
734,201 + SO0718 0.87 -0.2
734,234 + -0.1
734,234 + -0.1
734,234 + -0.2
734,234 + -0.1
734,236 + -0.9
734,271 - -0.3
734,290 - +0.1
734,323 + -1.8
734,323 + -0.3
734,331 - +0.1
734,331 - +0.1
734,331 - +1.0
734,433 - +0.4
734,450 - -0.6
734,475 + +0.5
734,595 - -0.1
734,608 - -0.4
734,624 + +0.6
734,624 + +0.1
734,632 - SO0719 0.10 +0.4
734,632 - SO0719 0.10 +0.4
734,729 + SO0719 0.15 +0.5
734,729 + SO0719 0.15 +0.8
734,729 + +0.5
734,729 + SO0719 0.15 -0.2
734,729 + SO0719 0.15 -0.3
734,729 + SO0719 0.15 -0.1
734,729 + SO0719 0.15 -0.7
734,737 - SO0719 0.15 +0.2
734,737 - SO0719 0.15 -1.5
734,737 - SO0719 0.15 +1.8
734,737 - SO0719 0.15 +0.9
734,737 - SO0719 0.15 +0.1
734,737 - SO0719 0.15 -0.2
734,737 - SO0719 0.15 -0.5
734,796 + SO0719 0.18 +0.3
734,806 + SO0719 0.18 +0.2
734,814 - SO0719 0.18 +0.6
734,900 + SO0719 0.22 -0.2
734,901 + SO0719 0.22 -0.1
734,909 - SO0719 0.23 +0.4
734,913 + SO0719 0.23 -0.1
735,010 - SO0719 0.27 -4.1
735,164 + SO0719 0.34 -1.0
735,179 - SO0719 0.35 +0.8
735,198 + SO0719 0.35 -0.6
735,215 + SO0719 0.36 +0.3
735,246 - SO0719 0.38 +0.2

Or see this region's nucleotide sequence