Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0440 and purD are separated by 178 nucleotides purD and purH are separated by 62 nucleotides
SO0440: SO0440 - conserved hypothetical protein (NCBI ptt file), at 465,030 to 468,251
SO0440
SO0441: purD - phosphoribosylamine--glycine ligase (NCBI ptt file), at 468,430 to 469,728
purD
SO0442: purH - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI ptt file), at 469,791 to 471,422
purH
Position (kb) 468
469
470 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 467.508 kb on + strand, within SO0440 at 467.527 kb on + strand, within SO0440 at 467.533 kb on - strand, within SO0440 at 467.545 kb on - strand, within SO0440 at 467.575 kb on + strand, within SO0440 at 467.625 kb on + strand, within SO0440 at 467.651 kb on + strand, within SO0440 at 467.669 kb on + strand, within SO0440 at 467.669 kb on - strand, within SO0440 at 467.788 kb on + strand, within SO0440 at 467.796 kb on - strand, within SO0440 at 467.845 kb on - strand, within SO0440 at 467.879 kb on + strand, within SO0440 at 467.930 kb on + strand at 468.060 kb on - strand at 468.157 kb on + strand at 468.167 kb on - strand at 468.175 kb on - strand at 468.204 kb on - strand at 468.219 kb on + strand at 468.421 kb on + strand at 468.429 kb on - strand at 468.441 kb on + strand at 468.441 kb on - strand at 468.492 kb on - strand at 468.550 kb on + strand at 468.550 kb on + strand at 468.553 kb on - strand at 468.589 kb on + strand, within purD at 468.636 kb on - strand, within purD at 468.682 kb on + strand, within purD at 468.779 kb on + strand, within purD at 468.785 kb on - strand, within purD at 468.899 kb on + strand, within purD at 468.900 kb on - strand, within purD at 468.915 kb on - strand, within purD at 468.915 kb on - strand, within purD at 468.951 kb on + strand, within purD at 469.016 kb on - strand, within purD at 469.264 kb on - strand, within purD at 469.447 kb on - strand, within purD at 469.472 kb on + strand, within purD at 469.576 kb on - strand, within purD at 469.635 kb on + strand at 469.635 kb on + strand at 469.639 kb on + strand at 469.643 kb on - strand at 469.643 kb on - strand at 469.643 kb on - strand at 469.643 kb on - strand at 469.649 kb on + strand at 469.657 kb on - strand at 469.657 kb on - strand at 469.676 kb on + strand at 469.738 kb on + strand at 469.806 kb on + strand at 469.987 kb on - strand, within purH at 469.995 kb on - strand, within purH at 470.022 kb on + strand, within purH at 470.104 kb on + strand, within purH at 470.114 kb on + strand, within purH at 470.163 kb on - strand, within purH at 470.174 kb on + strand, within purH at 470.183 kb on + strand, within purH at 470.241 kb on + strand, within purH at 470.254 kb on - strand, within purH at 470.276 kb on + strand, within purH at 470.329 kb on + strand, within purH at 470.337 kb on - strand, within purH at 470.388 kb on + strand, within purH at 470.490 kb on + strand, within purH at 470.493 kb on - strand, within purH at 470.495 kb on + strand, within purH at 470.495 kb on + strand, within purH at 470.495 kb on + strand, within purH at 470.495 kb on + strand, within purH at 470.495 kb on + strand, within purH at 470.511 kb on - strand, within purH at 470.517 kb on - strand, within purH at 470.703 kb on - strand, within purH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 467,508 + SO0440 0.77 -0.7 467,527 + SO0440 0.77 -0.3 467,533 - SO0440 0.78 -0.1 467,545 - SO0440 0.78 -0.1 467,575 + SO0440 0.79 +0.5 467,625 + SO0440 0.81 -0.9 467,651 + SO0440 0.81 -0.2 467,669 + SO0440 0.82 -0.2 467,669 - SO0440 0.82 -0.4 467,788 + SO0440 0.86 +0.1 467,796 - SO0440 0.86 +0.1 467,845 - SO0440 0.87 +0.6 467,879 + SO0440 0.88 +0.2 467,930 + +0.9 468,060 - -0.3 468,157 + +0.0 468,167 - +0.3 468,175 - -0.3 468,204 - +0.4 468,219 + -0.0 468,421 + -0.3 468,429 - +0.2 468,441 + -2.7 468,441 - -4.0 468,492 - -4.0 468,550 + -3.3 468,550 + -4.9 468,553 - -5.2 468,589 + purD SO0441 0.12 -3.0 468,636 - purD SO0441 0.16 -5.6 468,682 + purD SO0441 0.19 -3.7 468,779 + purD SO0441 0.27 -4.7 468,785 - purD SO0441 0.27 -3.6 468,899 + purD SO0441 0.36 -4.1 468,900 - purD SO0441 0.36 -4.5 468,915 - purD SO0441 0.37 -5.3 468,915 - purD SO0441 0.37 -3.6 468,951 + purD SO0441 0.40 -3.3 469,016 - purD SO0441 0.45 -2.7 469,264 - purD SO0441 0.64 -2.1 469,447 - purD SO0441 0.78 -3.2 469,472 + purD SO0441 0.80 -3.5 469,576 - purD SO0441 0.88 -1.3 469,635 + -5.2 469,635 + -6.3 469,639 + -4.9 469,643 - -4.1 469,643 - -2.5 469,643 - -4.6 469,643 - -4.7 469,649 + -4.3 469,657 - -4.3 469,657 - +0.7 469,676 + -3.1 469,738 + -3.2 469,806 + -4.8 469,987 - purH SO0442 0.12 -4.9 469,995 - purH SO0442 0.12 -4.2 470,022 + purH SO0442 0.14 -4.2 470,104 + purH SO0442 0.19 -4.2 470,114 + purH SO0442 0.20 -3.5 470,163 - purH SO0442 0.23 -1.9 470,174 + purH SO0442 0.23 -4.0 470,183 + purH SO0442 0.24 -4.0 470,241 + purH SO0442 0.28 -3.0 470,254 - purH SO0442 0.28 -2.1 470,276 + purH SO0442 0.30 -5.0 470,329 + purH SO0442 0.33 -3.7 470,337 - purH SO0442 0.33 -2.5 470,388 + purH SO0442 0.37 -3.0 470,490 + purH SO0442 0.43 -4.3 470,493 - purH SO0442 0.43 -4.7 470,495 + purH SO0442 0.43 -5.7 470,495 + purH SO0442 0.43 -3.0 470,495 + purH SO0442 0.43 -3.1 470,495 + purH SO0442 0.43 -4.1 470,495 + purH SO0442 0.43 -2.7 470,511 - purH SO0442 0.44 -4.9 470,517 - purH SO0442 0.44 -3.0 470,703 - purH SO0442 0.56 -4.9
Or see this region's nucleotide sequence