Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadA and fadB are separated by 22 nucleotides fadB and pepQ are separated by 425 nucleotides
SO0020: fadA - fatty oxidation complex, beta subunit (NCBI ptt file), at 23,307 to 24,470
fadA
SO0021: fadB - fatty oxidation complex, alpha subunit (NCBI ptt file), at 24,493 to 26,643
fadB
SO0022: pepQ - prolidase (NCBI ptt file), at 27,069 to 28,388
pepQ
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.499 kb on - strand, within fadA at 23.501 kb on + strand, within fadA at 23.509 kb on - strand, within fadA at 23.509 kb on - strand, within fadA at 23.509 kb on - strand, within fadA at 23.509 kb on - strand, within fadA at 23.510 kb on - strand, within fadA at 23.520 kb on + strand, within fadA at 23.521 kb on + strand, within fadA at 23.521 kb on + strand, within fadA at 23.529 kb on - strand, within fadA at 23.529 kb on - strand, within fadA at 23.576 kb on - strand, within fadA at 23.592 kb on + strand, within fadA at 23.595 kb on - strand, within fadA at 23.600 kb on - strand, within fadA at 23.601 kb on + strand, within fadA at 23.673 kb on - strand, within fadA at 23.712 kb on - strand, within fadA at 23.748 kb on - strand, within fadA at 23.750 kb on + strand, within fadA at 23.750 kb on + strand, within fadA at 23.758 kb on - strand, within fadA at 23.802 kb on + strand, within fadA at 23.802 kb on + strand, within fadA at 23.882 kb on + strand, within fadA at 23.930 kb on - strand, within fadA at 23.938 kb on + strand, within fadA at 23.938 kb on + strand, within fadA at 23.951 kb on + strand, within fadA at 23.963 kb on + strand, within fadA at 24.035 kb on + strand, within fadA at 24.037 kb on + strand, within fadA at 24.068 kb on - strand, within fadA at 24.105 kb on + strand, within fadA at 24.113 kb on + strand, within fadA at 24.136 kb on - strand, within fadA at 24.136 kb on - strand, within fadA at 24.268 kb on + strand, within fadA at 24.278 kb on - strand, within fadA at 24.278 kb on - strand, within fadA at 24.278 kb on - strand, within fadA at 24.281 kb on + strand, within fadA at 24.289 kb on - strand, within fadA at 24.289 kb on - strand, within fadA at 24.293 kb on + strand, within fadA at 24.293 kb on + strand, within fadA at 24.293 kb on + strand, within fadA at 24.293 kb on + strand, within fadA at 24.299 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.317 kb on + strand, within fadA at 24.353 kb on + strand, within fadA at 24.361 kb on + strand at 24.361 kb on - strand at 24.361 kb on - strand at 24.361 kb on - strand at 24.361 kb on - strand at 24.415 kb on + strand at 24.423 kb on - strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.428 kb on + strand at 24.434 kb on - strand at 24.434 kb on - strand at 24.434 kb on - strand at 24.541 kb on - strand at 24.570 kb on - strand at 24.646 kb on - strand at 24.662 kb on + strand at 24.662 kb on - strand at 24.673 kb on + strand at 24.711 kb on + strand, within fadB at 24.711 kb on + strand, within fadB at 24.719 kb on - strand, within fadB at 24.719 kb on - strand, within fadB at 24.811 kb on - strand, within fadB at 24.811 kb on - strand, within fadB at 24.813 kb on + strand, within fadB at 24.813 kb on + strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.856 kb on + strand, within fadB at 24.856 kb on + strand, within fadB at 24.866 kb on + strand, within fadB at 24.874 kb on + strand, within fadB at 24.889 kb on - strand, within fadB at 24.967 kb on + strand, within fadB at 24.967 kb on + strand, within fadB at 24.967 kb on + strand, within fadB at 24.975 kb on - strand, within fadB at 24.999 kb on - strand, within fadB at 25.207 kb on + strand, within fadB at 25.230 kb on + strand, within fadB at 25.230 kb on + strand, within fadB at 25.238 kb on - strand, within fadB at 25.256 kb on + strand, within fadB at 25.283 kb on + strand, within fadB at 25.291 kb on - strand, within fadB at 25.291 kb on - strand, within fadB at 25.291 kb on - strand, within fadB at 25.355 kb on + strand, within fadB at 25.403 kb on + strand, within fadB at 25.436 kb on - strand, within fadB at 25.485 kb on + strand, within fadB at 25.486 kb on + strand, within fadB at 25.486 kb on + strand, within fadB at 25.494 kb on - strand, within fadB at 25.497 kb on + strand, within fadB at 25.515 kb on - strand, within fadB at 25.590 kb on - strand, within fadB at 25.594 kb on + strand, within fadB at 25.700 kb on - strand, within fadB at 25.709 kb on + strand, within fadB at 25.786 kb on + strand, within fadB at 25.796 kb on + strand, within fadB at 25.898 kb on + strand, within fadB at 25.906 kb on - strand, within fadB at 25.924 kb on + strand, within fadB at 25.930 kb on + strand, within fadB at 25.943 kb on + strand, within fadB at 25.951 kb on - strand, within fadB at 25.951 kb on - strand, within fadB at 25.964 kb on + strand, within fadB at 25.964 kb on + strand, within fadB at 25.972 kb on - strand, within fadB at 25.972 kb on - strand, within fadB at 25.972 kb on - strand, within fadB at 26.044 kb on - strand, within fadB at 26.111 kb on - strand, within fadB at 26.135 kb on - strand, within fadB at 26.136 kb on - strand, within fadB at 26.156 kb on - strand, within fadB at 26.156 kb on - strand, within fadB at 26.173 kb on - strand, within fadB at 26.184 kb on + strand, within fadB at 26.203 kb on + strand, within fadB at 26.203 kb on + strand, within fadB at 26.251 kb on + strand, within fadB at 26.251 kb on + strand, within fadB at 26.269 kb on - strand, within fadB at 26.320 kb on + strand, within fadB at 26.374 kb on - strand, within fadB at 26.374 kb on - strand, within fadB at 26.374 kb on - strand, within fadB at 26.374 kb on - strand, within fadB at 26.376 kb on + strand, within fadB at 26.376 kb on + strand, within fadB at 26.379 kb on - strand, within fadB at 26.384 kb on - strand, within fadB at 26.384 kb on - strand, within fadB at 26.384 kb on - strand, within fadB at 26.389 kb on + strand, within fadB at 26.392 kb on - strand, within fadB at 26.394 kb on + strand, within fadB at 26.399 kb on + strand, within fadB at 26.399 kb on + strand, within fadB at 26.436 kb on + strand at 26.458 kb on + strand at 26.510 kb on - strand at 26.512 kb on + strand at 26.520 kb on - strand at 26.528 kb on + strand at 26.538 kb on + strand at 26.594 kb on - strand at 26.668 kb on - strand at 26.713 kb on - strand at 26.741 kb on + strand at 26.741 kb on + strand at 26.836 kb on + strand at 26.841 kb on + strand at 26.846 kb on + strand at 26.846 kb on + strand at 26.846 kb on + strand at 26.853 kb on + strand at 26.853 kb on + strand at 26.853 kb on + strand at 26.854 kb on - strand at 26.861 kb on - strand at 26.861 kb on - strand at 26.874 kb on - strand at 26.961 kb on + strand at 26.963 kb on - strand at 27.022 kb on - strand at 27.058 kb on + strand at 27.066 kb on - strand at 27.069 kb on + strand at 27.081 kb on + strand at 27.081 kb on + strand at 27.169 kb on + strand at 27.240 kb on - strand, within pepQ at 27.244 kb on + strand, within pepQ at 27.252 kb on + strand, within pepQ at 27.306 kb on - strand, within pepQ at 27.324 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.370 kb on - strand, within pepQ at 27.370 kb on - strand, within pepQ at 27.395 kb on + strand, within pepQ at 27.403 kb on - strand, within pepQ at 27.403 kb on - strand, within pepQ at 27.461 kb on + strand, within pepQ at 27.463 kb on + strand, within pepQ at 27.469 kb on - strand, within pepQ at 27.471 kb on - strand, within pepQ
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 23,499 - fadA SO0020 0.16 -0.4 23,501 + fadA SO0020 0.17 +0.3 23,509 - fadA SO0020 0.17 -0.0 23,509 - fadA SO0020 0.17 +0.2 23,509 - fadA SO0020 0.17 -0.8 23,509 - fadA SO0020 0.17 -0.1 23,510 - fadA SO0020 0.17 -1.1 23,520 + fadA SO0020 0.18 -0.2 23,521 + fadA SO0020 0.18 +1.0 23,521 + fadA SO0020 0.18 -0.6 23,529 - fadA SO0020 0.19 -1.4 23,529 - fadA SO0020 0.19 -2.7 23,576 - fadA SO0020 0.23 +0.3 23,592 + fadA SO0020 0.24 +0.3 23,595 - fadA SO0020 0.25 -0.5 23,600 - fadA SO0020 0.25 +0.6 23,601 + fadA SO0020 0.25 -0.2 23,673 - fadA SO0020 0.31 +1.0 23,712 - fadA SO0020 0.35 +0.9 23,748 - fadA SO0020 0.38 +0.1 23,750 + fadA SO0020 0.38 +0.9 23,750 + fadA SO0020 0.38 -0.4 23,758 - fadA SO0020 0.39 +0.7 23,802 + fadA SO0020 0.43 +0.9 23,802 + fadA SO0020 0.43 -0.2 23,882 + fadA SO0020 0.49 +0.5 23,930 - fadA SO0020 0.54 -0.4 23,938 + fadA SO0020 0.54 +0.6 23,938 + fadA SO0020 0.54 -0.3 23,951 + fadA SO0020 0.55 +0.2 23,963 + fadA SO0020 0.56 +1.1 24,035 + fadA SO0020 0.63 +0.5 24,037 + fadA SO0020 0.63 +0.7 24,068 - fadA SO0020 0.65 -0.7 24,105 + fadA SO0020 0.69 -0.2 24,113 + fadA SO0020 0.69 +0.4 24,136 - fadA SO0020 0.71 -0.2 24,136 - fadA SO0020 0.71 +1.2 24,268 + fadA SO0020 0.83 +0.0 24,278 - fadA SO0020 0.83 -0.0 24,278 - fadA SO0020 0.83 -1.1 24,278 - fadA SO0020 0.83 +0.3 24,281 + fadA SO0020 0.84 -0.5 24,289 - fadA SO0020 0.84 +0.2 24,289 - fadA SO0020 0.84 -0.8 24,293 + fadA SO0020 0.85 +1.1 24,293 + fadA SO0020 0.85 +0.7 24,293 + fadA SO0020 0.85 -0.3 24,293 + fadA SO0020 0.85 +0.2 24,299 - fadA SO0020 0.85 -0.1 24,301 - fadA SO0020 0.85 -0.8 24,301 - fadA SO0020 0.85 +0.7 24,301 - fadA SO0020 0.85 -0.6 24,301 - fadA SO0020 0.85 -0.3 24,317 + fadA SO0020 0.87 -0.1 24,353 + fadA SO0020 0.90 +0.4 24,361 + -0.1 24,361 - +0.1 24,361 - -0.1 24,361 - +0.1 24,361 - -0.1 24,415 + +0.2 24,423 - -0.4 24,426 + +0.5 24,426 + -0.3 24,426 + -0.5 24,426 + -0.0 24,426 + -0.1 24,426 + +0.3 24,428 + +0.1 24,434 - -0.3 24,434 - +0.5 24,434 - +0.0 24,541 - -0.2 24,570 - +0.6 24,646 - +0.0 24,662 + +0.1 24,662 - +0.1 24,673 + +0.7 24,711 + fadB SO0021 0.10 +0.4 24,711 + fadB SO0021 0.10 +0.8 24,719 - fadB SO0021 0.11 +0.1 24,719 - fadB SO0021 0.11 +0.7 24,811 - fadB SO0021 0.15 +0.5 24,811 - fadB SO0021 0.15 +0.3 24,813 + fadB SO0021 0.15 +1.2 24,813 + fadB SO0021 0.15 -2.4 24,821 - fadB SO0021 0.15 -0.1 24,821 - fadB SO0021 0.15 -0.2 24,821 - fadB SO0021 0.15 -0.3 24,821 - fadB SO0021 0.15 -0.3 24,821 - fadB SO0021 0.15 +0.2 24,856 + fadB SO0021 0.17 +0.2 24,856 + fadB SO0021 0.17 +0.7 24,866 + fadB SO0021 0.17 -0.3 24,874 + fadB SO0021 0.18 -0.3 24,889 - fadB SO0021 0.18 -0.5 24,967 + fadB SO0021 0.22 +0.5 24,967 + fadB SO0021 0.22 +0.7 24,967 + fadB SO0021 0.22 -0.6 24,975 - fadB SO0021 0.22 -0.2 24,999 - fadB SO0021 0.24 +0.0 25,207 + fadB SO0021 0.33 +0.4 25,230 + fadB SO0021 0.34 -0.3 25,230 + fadB SO0021 0.34 -0.3 25,238 - fadB SO0021 0.35 -2.3 25,256 + fadB SO0021 0.35 +0.1 25,283 + fadB SO0021 0.37 +0.1 25,291 - fadB SO0021 0.37 -0.9 25,291 - fadB SO0021 0.37 +0.1 25,291 - fadB SO0021 0.37 -0.3 25,355 + fadB SO0021 0.40 +0.2 25,403 + fadB SO0021 0.42 +0.1 25,436 - fadB SO0021 0.44 -0.3 25,485 + fadB SO0021 0.46 +0.2 25,486 + fadB SO0021 0.46 -0.7 25,486 + fadB SO0021 0.46 +0.3 25,494 - fadB SO0021 0.47 -0.4 25,497 + fadB SO0021 0.47 -1.6 25,515 - fadB SO0021 0.48 +0.0 25,590 - fadB SO0021 0.51 -2.4 25,594 + fadB SO0021 0.51 +0.1 25,700 - fadB SO0021 0.56 -0.0 25,709 + fadB SO0021 0.57 +0.7 25,786 + fadB SO0021 0.60 +0.1 25,796 + fadB SO0021 0.61 +0.0 25,898 + fadB SO0021 0.65 +0.3 25,906 - fadB SO0021 0.66 -0.5 25,924 + fadB SO0021 0.67 +1.6 25,930 + fadB SO0021 0.67 -0.8 25,943 + fadB SO0021 0.67 +0.2 25,951 - fadB SO0021 0.68 +0.3 25,951 - fadB SO0021 0.68 +0.0 25,964 + fadB SO0021 0.68 +0.8 25,964 + fadB SO0021 0.68 +0.3 25,972 - fadB SO0021 0.69 +0.1 25,972 - fadB SO0021 0.69 -0.5 25,972 - fadB SO0021 0.69 -0.1 26,044 - fadB SO0021 0.72 -0.4 26,111 - fadB SO0021 0.75 -0.2 26,135 - fadB SO0021 0.76 +0.1 26,136 - fadB SO0021 0.76 -0.2 26,156 - fadB SO0021 0.77 +0.6 26,156 - fadB SO0021 0.77 -2.1 26,173 - fadB SO0021 0.78 +0.3 26,184 + fadB SO0021 0.79 -1.8 26,203 + fadB SO0021 0.79 -0.5 26,203 + fadB SO0021 0.79 +0.3 26,251 + fadB SO0021 0.82 +0.5 26,251 + fadB SO0021 0.82 -0.0 26,269 - fadB SO0021 0.83 -0.0 26,320 + fadB SO0021 0.85 -0.3 26,374 - fadB SO0021 0.87 -0.7 26,374 - fadB SO0021 0.87 +0.1 26,374 - fadB SO0021 0.87 -0.1 26,374 - fadB SO0021 0.87 +0.3 26,376 + fadB SO0021 0.88 +0.7 26,376 + fadB SO0021 0.88 +0.3 26,379 - fadB SO0021 0.88 +0.3 26,384 - fadB SO0021 0.88 +0.2 26,384 - fadB SO0021 0.88 +0.5 26,384 - fadB SO0021 0.88 +0.4 26,389 + fadB SO0021 0.88 -0.8 26,392 - fadB SO0021 0.88 -0.1 26,394 + fadB SO0021 0.88 +0.5 26,399 + fadB SO0021 0.89 +0.7 26,399 + fadB SO0021 0.89 +0.1 26,436 + +0.5 26,458 + -0.0 26,510 - -0.1 26,512 + -0.3 26,520 - -0.7 26,528 + +0.2 26,538 + -0.1 26,594 - +0.0 26,668 - -1.5 26,713 - +0.3 26,741 + -0.3 26,741 + +0.0 26,836 + -0.6 26,841 + +1.0 26,846 + -0.1 26,846 + -0.4 26,846 + -0.2 26,853 + -0.3 26,853 + +0.1 26,853 + +0.4 26,854 - +0.2 26,861 - -0.3 26,861 - +2.1 26,874 - -0.0 26,961 + -0.2 26,963 - -0.0 27,022 - +0.5 27,058 + -0.0 27,066 - +0.7 27,069 + +1.7 27,081 + +0.2 27,081 + +0.0 27,169 + +1.2 27,240 - pepQ SO0022 0.13 +0.6 27,244 + pepQ SO0022 0.13 +0.7 27,252 + pepQ SO0022 0.14 -0.2 27,306 - pepQ SO0022 0.18 +0.1 27,324 + pepQ SO0022 0.19 -0.8 27,362 + pepQ SO0022 0.22 -0.1 27,362 + pepQ SO0022 0.22 -0.2 27,362 + pepQ SO0022 0.22 +0.5 27,362 + pepQ SO0022 0.22 -0.5 27,362 + pepQ SO0022 0.22 -1.1 27,362 + pepQ SO0022 0.22 -0.9 27,362 + pepQ SO0022 0.22 -0.3 27,362 + pepQ SO0022 0.22 +0.0 27,362 + pepQ SO0022 0.22 -0.0 27,370 - pepQ SO0022 0.23 -0.2 27,370 - pepQ SO0022 0.23 +0.4 27,395 + pepQ SO0022 0.25 -0.1 27,403 - pepQ SO0022 0.25 +0.0 27,403 - pepQ SO0022 0.25 +1.5 27,461 + pepQ SO0022 0.30 +0.1 27,463 + pepQ SO0022 0.30 -1.0 27,469 - pepQ SO0022 0.30 +0.2 27,471 - pepQ SO0022 0.30 +0.7
Or see this region's nucleotide sequence