Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09240 and PGA1_c09250 are separated by 34 nucleotides PGA1_c09250 and PGA1_c09260 are separated by 225 nucleotides PGA1_c09260 and PGA1_c09270 are separated by 144 nucleotides PGA1_c09270 and PGA1_c09280 are separated by 132 nucleotides
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497
_c09250
PGA1_c09260: PGA1_c09260 - Uncharacterized conserved protein, at 948,723 to 949,169
_c09260
PGA1_c09270: PGA1_c09270 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA, at 949,314 to 950,036
_c09270
PGA1_c09280: PGA1_c09280 - Uncharacterized protein conserved in bacteria, at 950,169 to 950,555
_c09280
Position (kb) 948
949
950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 948.010 kb on + strand at 948.020 kb on - strand at 948.054 kb on - strand at 948.054 kb on - strand at 948.093 kb on - strand, within PGA1_c09250 at 948.115 kb on + strand, within PGA1_c09250 at 948.160 kb on + strand, within PGA1_c09250 at 948.227 kb on + strand, within PGA1_c09250 at 948.235 kb on - strand, within PGA1_c09250 at 948.235 kb on - strand, within PGA1_c09250 at 948.245 kb on + strand, within PGA1_c09250 at 948.245 kb on + strand, within PGA1_c09250 at 948.252 kb on + strand, within PGA1_c09250 at 948.252 kb on + strand, within PGA1_c09250 at 948.253 kb on - strand, within PGA1_c09250 at 948.344 kb on - strand, within PGA1_c09250 at 948.436 kb on + strand, within PGA1_c09250 at 948.510 kb on + strand at 948.516 kb on - strand at 948.523 kb on - strand at 948.532 kb on + strand at 948.532 kb on + strand at 948.540 kb on - strand at 948.551 kb on - strand at 948.593 kb on + strand at 948.616 kb on + strand at 948.618 kb on - strand at 948.618 kb on - strand at 948.624 kb on - strand at 948.635 kb on + strand at 948.662 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.679 kb on + strand at 948.679 kb on + strand at 948.682 kb on - strand at 948.682 kb on - strand at 948.682 kb on - strand at 948.707 kb on + strand at 948.759 kb on + strand at 948.781 kb on + strand, within PGA1_c09260 at 948.781 kb on + strand, within PGA1_c09260 at 948.845 kb on - strand, within PGA1_c09260 at 948.870 kb on + strand, within PGA1_c09260 at 948.870 kb on + strand, within PGA1_c09260 at 948.975 kb on - strand, within PGA1_c09260 at 948.975 kb on - strand, within PGA1_c09260 at 949.091 kb on + strand, within PGA1_c09260 at 949.153 kb on - strand at 949.235 kb on - strand at 949.282 kb on + strand at 949.285 kb on - strand at 949.290 kb on - strand at 949.329 kb on + strand at 950.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 948,010 + -0.7 948,020 - +0.2 948,054 - -0.2 948,054 - +0.9 948,093 - PGA1_c09250 0.16 -1.0 948,115 + PGA1_c09250 0.21 -2.5 948,160 + PGA1_c09250 0.30 -0.7 948,227 + PGA1_c09250 0.44 -0.2 948,235 - PGA1_c09250 0.46 -0.7 948,235 - PGA1_c09250 0.46 -1.2 948,245 + PGA1_c09250 0.48 -2.4 948,245 + PGA1_c09250 0.48 -0.0 948,252 + PGA1_c09250 0.49 -0.7 948,252 + PGA1_c09250 0.49 -2.2 948,253 - PGA1_c09250 0.49 -0.6 948,344 - PGA1_c09250 0.68 +0.7 948,436 + PGA1_c09250 0.87 -1.7 948,510 + -0.5 948,516 - -0.9 948,523 - -0.6 948,532 + -2.0 948,532 + +0.3 948,540 - +0.8 948,551 - -0.4 948,593 + -0.0 948,616 + +0.6 948,618 - +0.4 948,618 - -0.7 948,624 - -0.8 948,635 + +0.6 948,662 + +0.4 948,669 + -1.5 948,669 + -2.6 948,669 + -3.2 948,669 + -1.0 948,674 + +0.4 948,674 + -0.2 948,674 + +0.3 948,674 + -1.1 948,677 - +1.2 948,677 - +1.2 948,677 - -0.8 948,677 - -0.2 948,679 + +0.7 948,679 + +1.4 948,682 - -0.6 948,682 - -2.2 948,682 - -1.6 948,707 + -1.8 948,759 + -0.6 948,781 + PGA1_c09260 0.13 +0.0 948,781 + PGA1_c09260 0.13 +1.4 948,845 - PGA1_c09260 0.27 +0.2 948,870 + PGA1_c09260 0.33 -1.8 948,870 + PGA1_c09260 0.33 +3.4 948,975 - PGA1_c09260 0.56 +1.2 948,975 - PGA1_c09260 0.56 -0.0 949,091 + PGA1_c09260 0.82 +0.9 949,153 - +1.3 949,235 - -0.1 949,282 + -0.9 949,285 - -1.5 949,290 - +1.0 949,329 + -1.2 950,117 + -1.5
Or see this region's nucleotide sequence