Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06090 and PGA1_c06100 are separated by 10 nucleotides PGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides PGA1_c06110 and PGA1_c06120 are separated by 29 nucleotides
PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847
_c06090
PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826
_c06100
PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271
_c06110
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
Position (kb) 624
625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 623.904 kb on - strand at 623.940 kb on + strand at 624.031 kb on + strand, within PGA1_c06100 at 624.054 kb on + strand, within PGA1_c06100 at 624.079 kb on + strand, within PGA1_c06100 at 624.099 kb on + strand, within PGA1_c06100 at 624.121 kb on + strand, within PGA1_c06100 at 624.160 kb on + strand, within PGA1_c06100 at 624.168 kb on + strand, within PGA1_c06100 at 624.285 kb on + strand, within PGA1_c06100 at 624.425 kb on + strand, within PGA1_c06100 at 624.478 kb on + strand, within PGA1_c06100 at 624.569 kb on + strand, within PGA1_c06100 at 624.617 kb on - strand, within PGA1_c06100 at 624.727 kb on - strand, within PGA1_c06100 at 624.751 kb on + strand at 624.767 kb on - strand at 624.786 kb on - strand at 624.808 kb on + strand at 624.821 kb on - strand at 624.879 kb on - strand at 625.064 kb on + strand, within PGA1_c06110 at 625.184 kb on + strand, within PGA1_c06110 at 625.283 kb on - strand, within PGA1_c06110 at 625.482 kb on - strand, within PGA1_c06110 at 625.511 kb on - strand, within PGA1_c06110 at 625.559 kb on - strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.586 kb on + strand, within PGA1_c06110 at 625.597 kb on - strand, within PGA1_c06110 at 625.783 kb on + strand, within PGA1_c06110 at 625.795 kb on + strand, within PGA1_c06110 at 625.830 kb on + strand, within PGA1_c06110 at 625.851 kb on - strand, within PGA1_c06110 at 625.878 kb on + strand, within PGA1_c06110 at 625.937 kb on - strand, within PGA1_c06110 at 625.941 kb on + strand, within PGA1_c06110 at 626.016 kb on - strand, within PGA1_c06110 at 626.157 kb on - strand at 626.157 kb on - strand at 626.259 kb on + strand at 626.327 kb on - strand at 626.341 kb on + strand at 626.418 kb on + strand at 626.419 kb on - strand at 626.499 kb on + strand, within PGA1_c06120 at 626.499 kb on + strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.535 kb on + strand, within PGA1_c06120 at 626.538 kb on - strand, within PGA1_c06120 at 626.538 kb on - strand, within PGA1_c06120 at 626.570 kb on - strand, within PGA1_c06120 at 626.595 kb on - strand, within PGA1_c06120 at 626.687 kb on - strand, within PGA1_c06120 at 626.687 kb on - strand, within PGA1_c06120 at 626.725 kb on + strand, within PGA1_c06120 at 626.742 kb on - strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.819 kb on + strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.969 kb on - strand, within PGA1_c06120 at 627.050 kb on - strand, within PGA1_c06120 at 627.115 kb on - strand, within PGA1_c06120 at 627.117 kb on + strand, within PGA1_c06120 at 627.178 kb on + strand, within PGA1_c06120 at 627.216 kb on + strand, within PGA1_c06120 at 627.234 kb on + strand, within PGA1_c06120 at 627.239 kb on + strand, within PGA1_c06120 at 627.242 kb on - strand, within PGA1_c06120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 623,904 - +1.1 623,940 + +1.1 624,031 + PGA1_c06100 0.18 +0.4 624,054 + PGA1_c06100 0.20 -0.9 624,079 + PGA1_c06100 0.23 -0.6 624,099 + PGA1_c06100 0.25 -0.1 624,121 + PGA1_c06100 0.27 +0.8 624,160 + PGA1_c06100 0.31 -0.5 624,168 + PGA1_c06100 0.32 +0.1 624,285 + PGA1_c06100 0.44 +1.4 624,425 + PGA1_c06100 0.59 +0.1 624,478 + PGA1_c06100 0.64 -0.5 624,569 + PGA1_c06100 0.73 +1.1 624,617 - PGA1_c06100 0.78 -1.0 624,727 - PGA1_c06100 0.90 -0.1 624,751 + -1.1 624,767 - -0.5 624,786 - -0.6 624,808 + -1.0 624,821 - -1.5 624,879 - +1.4 625,064 + PGA1_c06110 0.16 -0.5 625,184 + PGA1_c06110 0.25 -1.2 625,283 - PGA1_c06110 0.32 -1.5 625,482 - PGA1_c06110 0.45 +1.1 625,511 - PGA1_c06110 0.47 +0.1 625,559 - PGA1_c06110 0.51 -0.5 625,576 + PGA1_c06110 0.52 -0.2 625,576 + PGA1_c06110 0.52 -1.5 625,586 + PGA1_c06110 0.53 -1.7 625,597 - PGA1_c06110 0.53 +1.3 625,783 + PGA1_c06110 0.66 -1.2 625,795 + PGA1_c06110 0.67 +1.1 625,830 + PGA1_c06110 0.69 +1.1 625,851 - PGA1_c06110 0.71 -0.5 625,878 + PGA1_c06110 0.73 -0.9 625,937 - PGA1_c06110 0.77 +0.1 625,941 + PGA1_c06110 0.77 +1.1 626,016 - PGA1_c06110 0.82 +0.6 626,157 - -1.5 626,157 - +1.0 626,259 + +1.6 626,327 - +0.1 626,341 + +0.5 626,418 + +1.1 626,419 - -2.2 626,499 + PGA1_c06120 0.16 +2.1 626,499 + PGA1_c06120 0.16 +1.7 626,507 - PGA1_c06120 0.17 +2.7 626,507 - PGA1_c06120 0.17 -0.3 626,507 - PGA1_c06120 0.17 +0.1 626,535 + PGA1_c06120 0.19 +1.1 626,538 - PGA1_c06120 0.19 -0.5 626,538 - PGA1_c06120 0.19 -0.9 626,570 - PGA1_c06120 0.22 -2.2 626,595 - PGA1_c06120 0.24 -0.2 626,687 - PGA1_c06120 0.31 +0.1 626,687 - PGA1_c06120 0.31 +0.1 626,725 + PGA1_c06120 0.34 -2.5 626,742 - PGA1_c06120 0.36 -1.5 626,800 + PGA1_c06120 0.40 +0.1 626,800 + PGA1_c06120 0.40 +1.1 626,819 + PGA1_c06120 0.42 +0.5 626,917 - PGA1_c06120 0.50 -0.9 626,917 - PGA1_c06120 0.50 +0.1 626,919 + PGA1_c06120 0.50 -0.5 626,919 + PGA1_c06120 0.50 +0.1 626,969 - PGA1_c06120 0.54 -1.2 627,050 - PGA1_c06120 0.61 -0.9 627,115 - PGA1_c06120 0.66 +1.1 627,117 + PGA1_c06120 0.66 -1.6 627,178 + PGA1_c06120 0.71 +0.6 627,216 + PGA1_c06120 0.74 -0.0 627,234 + PGA1_c06120 0.76 -1.5 627,239 + PGA1_c06120 0.76 -0.3 627,242 - PGA1_c06120 0.76 -1.2
Or see this region's nucleotide sequence