Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05990 and PGA1_c06000 are separated by 58 nucleotides PGA1_c06000 and PGA1_c06010 are separated by 40 nucleotides PGA1_c06010 and PGA1_c06020 are separated by 99 nucleotides PGA1_c06020 and PGA1_c06030 are separated by 85 nucleotides
PGA1_c05990: PGA1_c05990 - formate--tetrahydrofolate ligase Fhs, at 612,539 to 614,215
_c05990
PGA1_c06000: PGA1_c06000 - chorismate mutase-like protein, at 614,274 to 614,579
_c06000
PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522
_c06010
PGA1_c06020: PGA1_c06020 - thioesterase domain-containing protein, at 615,622 to 616,032
_c06020
PGA1_c06030: PGA1_c06030 - DNA repair nuclease, ligase-associated (TIGR04123) <small>(from data)</small>, at 616,118 to 616,792
_c06030
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.650 kb on - strand, within PGA1_c05990 at 613.658 kb on - strand, within PGA1_c05990 at 613.708 kb on + strand, within PGA1_c05990 at 613.726 kb on - strand, within PGA1_c05990 at 613.737 kb on + strand, within PGA1_c05990 at 613.751 kb on - strand, within PGA1_c05990 at 613.852 kb on + strand, within PGA1_c05990 at 613.852 kb on + strand, within PGA1_c05990 at 613.857 kb on + strand, within PGA1_c05990 at 613.924 kb on + strand, within PGA1_c05990 at 614.185 kb on - strand at 614.205 kb on - strand at 614.307 kb on + strand, within PGA1_c06000 at 614.339 kb on + strand, within PGA1_c06000 at 614.348 kb on + strand, within PGA1_c06000 at 614.417 kb on + strand, within PGA1_c06000 at 614.497 kb on + strand, within PGA1_c06000 at 614.548 kb on + strand, within PGA1_c06000 at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.594 kb on - strand at 614.594 kb on - strand at 614.618 kb on - strand at 615.491 kb on + strand at 615.605 kb on - strand at 615.627 kb on - strand at 615.728 kb on + strand, within PGA1_c06020 at 615.811 kb on - strand, within PGA1_c06020 at 615.850 kb on - strand, within PGA1_c06020 at 615.916 kb on + strand, within PGA1_c06020 at 616.061 kb on - strand at 616.144 kb on - strand at 616.162 kb on + strand at 616.181 kb on + strand at 616.250 kb on - strand, within PGA1_c06030 at 616.303 kb on + strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.420 kb on - strand, within PGA1_c06030 at 616.448 kb on + strand, within PGA1_c06030 at 616.485 kb on + strand, within PGA1_c06030 at 616.490 kb on - strand, within PGA1_c06030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 613,650 - PGA1_c05990 0.66 -1.7 613,658 - PGA1_c05990 0.67 -0.8 613,708 + PGA1_c05990 0.70 -0.7 613,726 - PGA1_c05990 0.71 -0.7 613,737 + PGA1_c05990 0.71 +0.2 613,751 - PGA1_c05990 0.72 -1.8 613,852 + PGA1_c05990 0.78 -2.8 613,852 + PGA1_c05990 0.78 -3.5 613,857 + PGA1_c05990 0.79 -1.2 613,924 + PGA1_c05990 0.83 -3.4 614,185 - -2.4 614,205 - -2.3 614,307 + PGA1_c06000 0.11 +0.3 614,339 + PGA1_c06000 0.21 -1.7 614,348 + PGA1_c06000 0.24 -0.2 614,417 + PGA1_c06000 0.47 -1.2 614,497 + PGA1_c06000 0.73 -1.4 614,548 + PGA1_c06000 0.90 -0.9 614,586 + -0.6 614,586 + -2.7 614,586 + +0.2 614,586 + +0.5 614,586 + +0.4 614,586 + +0.4 614,594 - -1.4 614,594 - -0.1 614,618 - +0.1 615,491 + +0.7 615,605 - -1.4 615,627 - -0.4 615,728 + PGA1_c06020 0.26 -1.0 615,811 - PGA1_c06020 0.46 -1.6 615,850 - PGA1_c06020 0.55 +0.5 615,916 + PGA1_c06020 0.72 +0.3 616,061 - -2.0 616,144 - +1.0 616,162 + -1.0 616,181 + -0.3 616,250 - PGA1_c06030 0.20 +0.4 616,303 + PGA1_c06030 0.27 +1.6 616,310 - PGA1_c06030 0.28 -1.2 616,310 - PGA1_c06030 0.28 -2.3 616,310 - PGA1_c06030 0.28 -0.9 616,420 - PGA1_c06030 0.45 -0.7 616,448 + PGA1_c06030 0.49 -0.4 616,485 + PGA1_c06030 0.54 -0.9 616,490 - PGA1_c06030 0.55 +0.1
Or see this region's nucleotide sequence