Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05970 and PGA1_c05980 are separated by 184 nucleotides PGA1_c05980 and PGA1_c05990 are separated by 222 nucleotides
PGA1_c05970: PGA1_c05970 - ATP-dependent zinc metalloprotease FtsH, at 609,640 to 611,553
_c05970
PGA1_c05980: PGA1_c05980 - Uncharacterized protein conserved in bacteria, at 611,738 to 612,316
_c05980
PGA1_c05990: PGA1_c05990 - formate--tetrahydrofolate ligase Fhs, at 612,539 to 614,215
_c05990
Position (kb) 611
612
613 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 611.466 kb on - strand at 611.594 kb on + strand at 611.594 kb on + strand at 611.625 kb on + strand at 611.670 kb on + strand at 611.683 kb on + strand at 611.996 kb on + strand, within PGA1_c05980 at 612.047 kb on - strand, within PGA1_c05980 at 612.144 kb on + strand, within PGA1_c05980 at 612.235 kb on - strand, within PGA1_c05980 at 612.237 kb on + strand, within PGA1_c05980 at 612.240 kb on - strand, within PGA1_c05980 at 612.246 kb on + strand, within PGA1_c05980 at 612.264 kb on - strand at 612.330 kb on - strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.498 kb on + strand at 612.542 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.583 kb on - strand at 612.662 kb on - strand at 612.773 kb on + strand, within PGA1_c05990 at 612.931 kb on - strand, within PGA1_c05990 at 613.096 kb on + strand, within PGA1_c05990 at 613.139 kb on - strand, within PGA1_c05990 at 613.140 kb on + strand, within PGA1_c05990 at 613.176 kb on - strand, within PGA1_c05990 at 613.195 kb on + strand, within PGA1_c05990 at 613.293 kb on - strand, within PGA1_c05990 at 613.312 kb on + strand, within PGA1_c05990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 611,466 - -1.4 611,594 + -0.1 611,594 + +0.8 611,625 + +1.7 611,670 + -1.2 611,683 + -0.4 611,996 + PGA1_c05980 0.45 -1.9 612,047 - PGA1_c05980 0.53 +0.7 612,144 + PGA1_c05980 0.70 -0.3 612,235 - PGA1_c05980 0.86 -0.1 612,237 + PGA1_c05980 0.86 +0.7 612,240 - PGA1_c05980 0.87 -1.4 612,246 + PGA1_c05980 0.88 +1.6 612,264 - -0.4 612,330 - +1.8 612,396 + -0.6 612,396 + +0.2 612,396 + +1.7 612,396 + -0.8 612,396 + +0.3 612,396 + +1.2 612,396 + -0.4 612,396 + -0.0 612,396 + -1.4 612,404 - +1.2 612,404 - +1.0 612,404 - -0.1 612,404 - +1.2 612,404 - +0.3 612,404 - +0.1 612,404 - -1.2 612,404 - +1.7 612,404 - -0.2 612,498 + -1.0 612,542 + -1.2 612,575 + -0.1 612,575 + -1.2 612,575 + -0.4 612,575 + -0.4 612,583 - -0.8 612,662 - -2.9 612,773 + PGA1_c05990 0.14 -2.8 612,931 - PGA1_c05990 0.23 -1.8 613,096 + PGA1_c05990 0.33 -0.4 613,139 - PGA1_c05990 0.36 -1.7 613,140 + PGA1_c05990 0.36 -3.9 613,176 - PGA1_c05990 0.38 -1.2 613,195 + PGA1_c05990 0.39 -0.4 613,293 - PGA1_c05990 0.45 -1.4 613,312 + PGA1_c05990 0.46 -0.8
Or see this region's nucleotide sequence