Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05630 and PGA1_c05640 are separated by 37 nucleotides PGA1_c05640 and PGA1_c05650 are separated by 155 nucleotides PGA1_c05650 and PGA1_c05660 are separated by 145 nucleotides
PGA1_c05630: PGA1_c05630 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 576,069 to 576,533
_c05630
PGA1_c05640: PGA1_c05640 - hypothetical protein, at 576,571 to 577,242
_c05640
PGA1_c05650: PGA1_c05650 - tRNA pseudouridine synthase A, at 577,398 to 578,171
_c05650
PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732
_c05660
Position (kb) 577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 576.466 kb on + strand, within PGA1_c05630 at 576.474 kb on - strand, within PGA1_c05630 at 576.476 kb on + strand, within PGA1_c05630 at 576.484 kb on - strand, within PGA1_c05630 at 576.484 kb on - strand, within PGA1_c05630 at 576.506 kb on - strand at 576.506 kb on - strand at 576.512 kb on + strand at 576.538 kb on + strand at 576.676 kb on + strand, within PGA1_c05640 at 576.714 kb on + strand, within PGA1_c05640 at 576.748 kb on + strand, within PGA1_c05640 at 576.756 kb on - strand, within PGA1_c05640 at 576.756 kb on - strand, within PGA1_c05640 at 576.865 kb on + strand, within PGA1_c05640 at 576.865 kb on + strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 577.048 kb on - strand, within PGA1_c05640 at 577.121 kb on - strand, within PGA1_c05640 at 577.121 kb on - strand, within PGA1_c05640 at 577.349 kb on + strand at 577.357 kb on - strand at 577.357 kb on - strand at 577.357 kb on - strand at 577.359 kb on + strand at 577.367 kb on - strand at 577.374 kb on + strand at 577.467 kb on - strand at 577.544 kb on + strand, within PGA1_c05650 at 577.571 kb on - strand, within PGA1_c05650 at 577.637 kb on - strand, within PGA1_c05650 at 578.124 kb on + strand at 578.251 kb on + strand at 578.251 kb on + strand at 578.251 kb on + strand at 578.251 kb on + strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.291 kb on - strand at 578.344 kb on + strand at 578.352 kb on - strand at 578.354 kb on + strand at 578.354 kb on + strand at 578.354 kb on + strand at 578.354 kb on + strand at 578.430 kb on - strand at 578.430 kb on - strand at 578.430 kb on - strand at 578.456 kb on + strand at 578.456 kb on + strand at 578.489 kb on + strand, within PGA1_c05660 at 578.647 kb on + strand, within PGA1_c05660 at 578.667 kb on + strand, within PGA1_c05660 at 578.668 kb on - strand, within PGA1_c05660 at 578.782 kb on + strand, within PGA1_c05660 at 578.947 kb on + strand, within PGA1_c05660 at 578.952 kb on + strand, within PGA1_c05660 at 578.952 kb on + strand, within PGA1_c05660 at 579.010 kb on - strand, within PGA1_c05660 at 579.014 kb on + strand, within PGA1_c05660 at 579.159 kb on + strand, within PGA1_c05660
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 576,466 + PGA1_c05630 0.85 -0.2 576,474 - PGA1_c05630 0.87 -2.1 576,476 + PGA1_c05630 0.88 +1.0 576,484 - PGA1_c05630 0.89 -1.5 576,484 - PGA1_c05630 0.89 +1.4 576,506 - -0.4 576,506 - +0.4 576,512 + +0.5 576,538 + -0.4 576,676 + PGA1_c05640 0.16 -0.4 576,714 + PGA1_c05640 0.21 -0.9 576,748 + PGA1_c05640 0.26 -1.6 576,756 - PGA1_c05640 0.28 +0.8 576,756 - PGA1_c05640 0.28 +0.7 576,865 + PGA1_c05640 0.44 -1.4 576,865 + PGA1_c05640 0.44 -2.0 576,873 - PGA1_c05640 0.45 -0.8 576,873 - PGA1_c05640 0.45 -0.1 576,873 - PGA1_c05640 0.45 -1.0 576,873 - PGA1_c05640 0.45 +0.4 577,048 - PGA1_c05640 0.71 +0.3 577,121 - PGA1_c05640 0.82 -1.8 577,121 - PGA1_c05640 0.82 -0.7 577,349 + -0.4 577,357 - +0.9 577,357 - +0.6 577,357 - -0.8 577,359 + -0.8 577,367 - -0.2 577,374 + -2.6 577,467 - -2.0 577,544 + PGA1_c05650 0.19 -0.4 577,571 - PGA1_c05650 0.22 +1.2 577,637 - PGA1_c05650 0.31 -1.5 578,124 + -0.4 578,251 + +1.2 578,251 + -0.6 578,251 + -1.2 578,251 + -1.5 578,259 - -1.2 578,259 - +1.2 578,259 - -1.2 578,259 - -0.6 578,259 - +0.2 578,259 - -1.2 578,291 - -1.2 578,344 + -1.5 578,352 - -2.0 578,354 + -1.1 578,354 + -2.8 578,354 + -2.6 578,354 + -0.2 578,430 - -0.6 578,430 - +0.2 578,430 - -1.3 578,456 + +0.8 578,456 + -2.4 578,489 + PGA1_c05660 0.12 -0.4 578,647 + PGA1_c05660 0.23 -1.0 578,667 + PGA1_c05660 0.25 -0.2 578,668 - PGA1_c05660 0.25 -1.8 578,782 + PGA1_c05660 0.33 -2.0 578,947 + PGA1_c05660 0.44 -1.6 578,952 + PGA1_c05660 0.45 +0.7 578,952 + PGA1_c05660 0.45 -0.7 579,010 - PGA1_c05660 0.49 -1.8 579,014 + PGA1_c05660 0.49 -0.9 579,159 + PGA1_c05660 0.59 -1.1
Or see this region's nucleotide sequence