Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05480

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05460 and PGA1_c05470 are separated by 84 nucleotidesPGA1_c05470 and PGA1_c05480 are separated by 154 nucleotidesPGA1_c05480 and PGA1_c05490 are separated by 43 nucleotidesPGA1_c05490 and PGA1_c05500 are separated by 135 nucleotides PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000 _c05460 PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456 _c05470 PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026 _c05480 PGA1_c05490: PGA1_c05490 - ureidoglycolate hydrolase AllA, at 561,070 to 561,555 _c05490 PGA1_c05500: PGA1_c05500 - putative purine permease, at 561,691 to 563,118 _c05500 Position (kb) 559 560 561 562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 558.641 kb on + strand, within PGA1_c05460at 558.641 kb on + strand, within PGA1_c05460at 558.651 kb on + strand, within PGA1_c05460at 558.654 kb on - strand, within PGA1_c05460at 558.659 kb on - strand, within PGA1_c05460at 558.659 kb on - strand, within PGA1_c05460at 558.674 kb on - strand, within PGA1_c05460at 558.731 kb on + strand, within PGA1_c05460at 558.892 kb on + strand, within PGA1_c05460at 558.900 kb on - strand, within PGA1_c05460at 558.900 kb on - strand, within PGA1_c05460at 558.952 kb on + strandat 558.974 kb on + strandat 559.003 kb on - strandat 559.392 kb on + strand, within PGA1_c05470at 559.392 kb on + strand, within PGA1_c05470at 559.412 kb on + strand, within PGA1_c05470at 559.489 kb on - strandat 559.505 kb on + strandat 559.505 kb on + strandat 559.505 kb on + strandat 559.512 kb on + strandat 559.512 kb on + strandat 559.520 kb on - strandat 559.567 kb on - strandat 559.729 kb on + strandat 559.753 kb on + strand, within PGA1_c05480at 559.775 kb on - strand, within PGA1_c05480at 559.834 kb on - strand, within PGA1_c05480at 559.874 kb on + strand, within PGA1_c05480at 559.933 kb on + strand, within PGA1_c05480at 559.933 kb on + strand, within PGA1_c05480at 560.012 kb on - strand, within PGA1_c05480at 560.014 kb on + strand, within PGA1_c05480at 560.014 kb on + strand, within PGA1_c05480at 560.014 kb on + strand, within PGA1_c05480at 560.017 kb on - strand, within PGA1_c05480at 560.022 kb on + strand, within PGA1_c05480at 560.022 kb on - strand, within PGA1_c05480at 560.077 kb on + strand, within PGA1_c05480at 560.170 kb on + strand, within PGA1_c05480at 560.317 kb on + strand, within PGA1_c05480at 560.317 kb on + strand, within PGA1_c05480at 560.317 kb on + strand, within PGA1_c05480at 560.317 kb on + strand, within PGA1_c05480at 560.317 kb on + strand, within PGA1_c05480at 560.317 kb on + strand, within PGA1_c05480at 560.325 kb on - strand, within PGA1_c05480at 560.325 kb on - strand, within PGA1_c05480at 560.325 kb on - strand, within PGA1_c05480at 560.327 kb on + strand, within PGA1_c05480at 560.327 kb on + strand, within PGA1_c05480at 560.327 kb on + strand, within PGA1_c05480at 560.327 kb on + strand, within PGA1_c05480at 560.327 kb on + strand, within PGA1_c05480at 560.327 kb on + strand, within PGA1_c05480at 560.335 kb on - strand, within PGA1_c05480at 560.532 kb on + strand, within PGA1_c05480at 560.596 kb on - strand, within PGA1_c05480at 560.631 kb on + strand, within PGA1_c05480at 560.631 kb on + strand, within PGA1_c05480at 560.631 kb on + strand, within PGA1_c05480at 560.639 kb on - strand, within PGA1_c05480at 560.639 kb on - strand, within PGA1_c05480at 560.639 kb on - strand, within PGA1_c05480at 560.714 kb on - strand, within PGA1_c05480at 560.757 kb on - strand, within PGA1_c05480at 560.779 kb on - strand, within PGA1_c05480at 560.786 kb on + strand, within PGA1_c05480at 560.838 kb on - strand, within PGA1_c05480at 560.923 kb on + strandat 560.923 kb on + strandat 560.923 kb on + strandat 560.923 kb on + strandat 560.923 kb on + strandat 560.931 kb on - strandat 560.931 kb on - strandat 560.931 kb on - strandat 561.023 kb on - strandat 561.025 kb on + strandat 561.028 kb on - strandat 561.038 kb on + strandat 561.046 kb on - strandat 561.106 kb on - strandat 561.107 kb on + strandat 561.168 kb on + strand, within PGA1_c05490at 561.207 kb on - strand, within PGA1_c05490at 561.237 kb on + strand, within PGA1_c05490at 561.261 kb on + strand, within PGA1_c05490at 561.284 kb on - strand, within PGA1_c05490at 561.307 kb on + strand, within PGA1_c05490at 561.334 kb on - strand, within PGA1_c05490at 561.350 kb on + strand, within PGA1_c05490at 561.355 kb on + strand, within PGA1_c05490at 561.375 kb on - strand, within PGA1_c05490at 561.416 kb on + strand, within PGA1_c05490at 561.416 kb on + strand, within PGA1_c05490at 561.434 kb on + strand, within PGA1_c05490at 561.514 kb on + strandat 561.530 kb on + strandat 561.583 kb on - strandat 561.645 kb on - strandat 561.689 kb on - strandat 561.689 kb on - strandat 561.689 kb on - strandat 561.713 kb on + strandat 561.753 kb on + strandat 561.753 kb on + strandat 561.753 kb on + strandat 561.761 kb on - strandat 561.761 kb on - strandat 561.789 kb on + strandat 561.792 kb on - strandat 561.797 kb on - strandat 561.797 kb on - strandat 561.853 kb on + strand, within PGA1_c05500at 561.853 kb on + strand, within PGA1_c05500at 561.853 kb on + strand, within PGA1_c05500at 561.853 kb on + strand, within PGA1_c05500at 561.853 kb on + strand, within PGA1_c05500at 561.861 kb on - strand, within PGA1_c05500at 561.861 kb on - strand, within PGA1_c05500at 561.914 kb on - strand, within PGA1_c05500at 561.920 kb on + strand, within PGA1_c05500at 561.976 kb on + strand, within PGA1_c05500at 561.979 kb on - strand, within PGA1_c05500at 561.984 kb on - strand, within PGA1_c05500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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558,641 + PGA1_c05460 0.63 +1.2
558,641 + PGA1_c05460 0.63 -0.2
558,651 + PGA1_c05460 0.64 -0.9
558,654 - PGA1_c05460 0.64 -0.7
558,659 - PGA1_c05460 0.65 -0.3
558,659 - PGA1_c05460 0.65 -0.0
558,674 - PGA1_c05460 0.66 +0.3
558,731 + PGA1_c05460 0.72 -0.7
558,892 + PGA1_c05460 0.89 -0.6
558,900 - PGA1_c05460 0.90 +0.2
558,900 - PGA1_c05460 0.90 -0.5
558,952 + -1.0
558,974 + +0.2
559,003 - -2.8
559,392 + PGA1_c05470 0.83 +0.9
559,392 + PGA1_c05470 0.83 -0.2
559,412 + PGA1_c05470 0.88 -0.4
559,489 - +1.0
559,505 + +1.2
559,505 + -0.7
559,505 + -1.5
559,512 + +1.2
559,512 + +0.7
559,520 - +0.7
559,567 - -2.3
559,729 + -1.2
559,753 + PGA1_c05480 0.10 +0.9
559,775 - PGA1_c05480 0.12 +1.5
559,834 - PGA1_c05480 0.16 -2.9
559,874 + PGA1_c05480 0.19 +0.1
559,933 + PGA1_c05480 0.23 -2.9
559,933 + PGA1_c05480 0.23 +0.6
560,012 - PGA1_c05480 0.28 -2.1
560,014 + PGA1_c05480 0.28 +0.7
560,014 + PGA1_c05480 0.28 -0.2
560,014 + PGA1_c05480 0.28 -0.4
560,017 - PGA1_c05480 0.29 -0.8
560,022 + PGA1_c05480 0.29 +1.0
560,022 - PGA1_c05480 0.29 -0.7
560,077 + PGA1_c05480 0.33 +1.4
560,170 + PGA1_c05480 0.39 +2.0
560,317 + PGA1_c05480 0.50 -0.4
560,317 + PGA1_c05480 0.50 -0.4
560,317 + PGA1_c05480 0.50 -0.5
560,317 + PGA1_c05480 0.50 +1.2
560,317 + PGA1_c05480 0.50 +0.4
560,317 + PGA1_c05480 0.50 +0.1
560,325 - PGA1_c05480 0.50 -0.0
560,325 - PGA1_c05480 0.50 -2.0
560,325 - PGA1_c05480 0.50 +0.7
560,327 + PGA1_c05480 0.51 -0.4
560,327 + PGA1_c05480 0.51 +0.4
560,327 + PGA1_c05480 0.51 -1.1
560,327 + PGA1_c05480 0.51 +0.2
560,327 + PGA1_c05480 0.51 +1.2
560,327 + PGA1_c05480 0.51 +1.4
560,335 - PGA1_c05480 0.51 -1.3
560,532 + PGA1_c05480 0.65 -0.1
560,596 - PGA1_c05480 0.70 +1.3
560,631 + PGA1_c05480 0.72 +0.5
560,631 + PGA1_c05480 0.72 -0.7
560,631 + PGA1_c05480 0.72 +0.2
560,639 - PGA1_c05480 0.73 +0.1
560,639 - PGA1_c05480 0.73 -1.7
560,639 - PGA1_c05480 0.73 -1.4
560,714 - PGA1_c05480 0.78 +0.6
560,757 - PGA1_c05480 0.81 +0.3
560,779 - PGA1_c05480 0.82 +1.2
560,786 + PGA1_c05480 0.83 -1.4
560,838 - PGA1_c05480 0.87 +0.1
560,923 + +1.8
560,923 + +0.4
560,923 + -0.3
560,923 + -0.8
560,923 + -2.1
560,931 - -0.8
560,931 - +0.2
560,931 - -0.4
561,023 - +1.2
561,025 + -0.6
561,028 - +0.2
561,038 + -0.9
561,046 - +0.5
561,106 - -0.2
561,107 + -0.6
561,168 + PGA1_c05490 0.20 -0.8
561,207 - PGA1_c05490 0.28 +1.2
561,237 + PGA1_c05490 0.34 +0.0
561,261 + PGA1_c05490 0.39 +0.5
561,284 - PGA1_c05490 0.44 +0.9
561,307 + PGA1_c05490 0.49 -0.8
561,334 - PGA1_c05490 0.54 -1.0
561,350 + PGA1_c05490 0.58 +0.3
561,355 + PGA1_c05490 0.59 -3.1
561,375 - PGA1_c05490 0.63 -0.4
561,416 + PGA1_c05490 0.71 -2.1
561,416 + PGA1_c05490 0.71 -0.4
561,434 + PGA1_c05490 0.75 +1.1
561,514 + -1.0
561,530 + +2.2
561,583 - -0.4
561,645 - -0.6
561,689 - +0.1
561,689 - -0.4
561,689 - -1.1
561,713 + +0.3
561,753 + -0.0
561,753 + +0.6
561,753 + +0.7
561,761 - -1.6
561,761 - -1.1
561,789 + +0.5
561,792 - -0.4
561,797 - -0.4
561,797 - -1.1
561,853 + PGA1_c05500 0.11 +0.9
561,853 + PGA1_c05500 0.11 +0.4
561,853 + PGA1_c05500 0.11 +1.4
561,853 + PGA1_c05500 0.11 -0.2
561,853 + PGA1_c05500 0.11 +1.9
561,861 - PGA1_c05500 0.12 +0.2
561,861 - PGA1_c05500 0.12 +0.9
561,914 - PGA1_c05500 0.16 +0.0
561,920 + PGA1_c05500 0.16 +0.9
561,976 + PGA1_c05500 0.20 +1.1
561,979 - PGA1_c05500 0.20 +0.2
561,984 - PGA1_c05500 0.21 -0.4

Or see this region's nucleotide sequence