Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28680

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,001,683	-				-0.2
3,001,698	+				+0.7
3,001,703	+				+0.2
3,001,705	-				+3.8
3,001,710	+				+0.2
3,001,710	+				+0.5
3,001,718	-				-1.0
3,001,718	-				-1.0
3,001,722	+				+0.8
3,001,724	-				+1.8
3,001,768	-				+0.6
3,001,775	-				-0.4
3,001,778	-				+0.2
3,001,787	+				-3.2
3,001,790	-				-0.6
3,001,795	-				-0.4
3,001,801	+				+2.2
3,001,830	+				-0.2
3,001,867	+				-1.8
3,001,910	+				+1.9
3,001,918	-		PGA1_c28670	0.10	+1.2
3,001,954	+		PGA1_c28670	0.15	+0.5
3,001,954	+		PGA1_c28670	0.15	+1.2
3,001,956	+		PGA1_c28670	0.15	+0.8
3,001,962	-		PGA1_c28670	0.16	+0.8
3,001,962	-		PGA1_c28670	0.16	-1.1
3,001,964	-		PGA1_c28670	0.16	+0.9
3,001,964	-		PGA1_c28670	0.16	+0.2
3,001,967	-		PGA1_c28670	0.17	+2.2
3,001,976	+		PGA1_c28670	0.18	+0.4
3,001,976	-		PGA1_c28670	0.18	+0.9
3,002,037	-		PGA1_c28670	0.26	-0.4
3,002,060	+		PGA1_c28670	0.29	-0.4
3,002,083	-		PGA1_c28670	0.32	+0.6
3,002,104	+		PGA1_c28670	0.35	-0.0
3,002,112	-		PGA1_c28670	0.36	-0.1
3,002,184	-		PGA1_c28670	0.46	+0.7
3,002,184	-		PGA1_c28670	0.46	+0.5
3,002,198	-		PGA1_c28670	0.47	-1.0
3,002,211	-		PGA1_c28670	0.49	-0.5
3,002,222	+		PGA1_c28670	0.51	+0.4
3,002,319	+		PGA1_c28670	0.63	-1.1
3,002,319	+		PGA1_c28670	0.63	+0.6
3,002,325	+		PGA1_c28670	0.64	+0.5
3,002,345	-		PGA1_c28670	0.67	-0.1
3,002,398	+		PGA1_c28670	0.74	-1.0
3,002,468	+		PGA1_c28670	0.83	+0.1
3,002,468	+		PGA1_c28670	0.83	+1.2
3,002,468	+		PGA1_c28670	0.83	-1.8
3,002,473	+		PGA1_c28670	0.84	+0.5
3,002,476	-		PGA1_c28670	0.84	-1.3
3,002,481	-		PGA1_c28670	0.85	+0.8
3,002,481	-		PGA1_c28670	0.85	+1.5
3,002,481	-		PGA1_c28670	0.85	+1.1
3,002,481	-		PGA1_c28670	0.85	+0.1
3,002,481	-		PGA1_c28670	0.85	+0.9
3,002,481	-		PGA1_c28670	0.85	+1.9
3,002,481	-		PGA1_c28670	0.85	+0.5
3,002,513	-		PGA1_c28670	0.89	-0.0
3,002,528	+				+1.6
3,002,536	+				+0.6
3,002,544	-				+0.7
3,002,547	+				+0.5
3,002,547	+				+0.1
3,002,547	+				+0.5
3,002,547	+				+1.2
3,002,555	-				-1.6
3,002,573	-				-0.8
3,002,584	+				-0.4
3,002,611	+				-0.8
3,002,613	+				-0.2
3,002,625	+				+1.6
3,002,628	-				+0.4
3,002,633	-				-1.1
3,002,638	+				-0.4
3,002,670	+				+0.2
3,002,692	-				+1.8
3,002,692	-				+0.0
3,002,698	+				+0.9
3,002,698	+				-0.8
3,002,698	+				-2.3
3,002,705	+				-2.7
3,002,705	+				-1.0
3,002,705	+				-0.9
3,002,706	-				-0.4
3,002,713	-				+0.4
3,002,713	-				-0.4
3,002,713	-				+0.2
3,002,713	-				-0.1
3,002,713	-				+0.2
3,002,715	+				-0.4
3,002,762	-				-2.6
3,002,762	-				-1.0
3,002,795	+				+0.1
3,002,894	+				-1.5
3,002,902	-				-1.4
3,002,924	+				+0.5
3,003,004	+		PGA1_c28680	0.13	-0.9
3,003,012	-		PGA1_c28680	0.13	-0.8
3,003,012	-		PGA1_c28680	0.13	-0.0
3,003,022	-		PGA1_c28680	0.13	-0.7
3,003,130	+		PGA1_c28680	0.17	+0.1
3,003,145	-		PGA1_c28680	0.18	+0.5
3,003,176	+		PGA1_c28680	0.19	+0.3
3,003,176	+		PGA1_c28680	0.19	+1.7
3,003,176	+		PGA1_c28680	0.19	-0.6
3,003,176	+		PGA1_c28680	0.19	+0.9
3,003,178	+		PGA1_c28680	0.19	-1.4
3,003,178	+		PGA1_c28680	0.19	-1.6
3,003,184	-		PGA1_c28680	0.20	-0.7
3,003,186	-		PGA1_c28680	0.20	-0.7
3,003,192	+		PGA1_c28680	0.20	+0.3
3,003,192	+		PGA1_c28680	0.20	+1.2
3,003,197	+		PGA1_c28680	0.20	+0.5
3,003,209	+		PGA1_c28680	0.21	+1.2
3,003,210	-		PGA1_c28680	0.21	-0.5
3,003,211	+		PGA1_c28680	0.21	-0.2
3,003,216	+		PGA1_c28680	0.21	-0.0
3,003,224	-		PGA1_c28680	0.21	+0.0
3,003,264	+		PGA1_c28680	0.23	-1.0
3,003,275	+		PGA1_c28680	0.23	+0.8
3,003,287	+		PGA1_c28680	0.24	+0.2
3,003,289	+		PGA1_c28680	0.24	+0.2
3,003,289	+		PGA1_c28680	0.24	-0.2
3,003,297	-		PGA1_c28680	0.24	-0.4
3,003,297	-		PGA1_c28680	0.24	+0.7
3,003,297	-		PGA1_c28680	0.24	+1.9
3,003,312	-		PGA1_c28680	0.25	-0.6
3,003,392	+		PGA1_c28680	0.28	+0.9
3,003,436	+		PGA1_c28680	0.29	-0.1
3,003,440	-		PGA1_c28680	0.29	+0.2
3,003,612	+		PGA1_c28680	0.36	+1.2
3,003,612	+		PGA1_c28680	0.36	-1.0
3,003,620	-		PGA1_c28680	0.36	-2.1
3,003,620	-		PGA1_c28680	0.36	+0.5
3,003,620	-		PGA1_c28680	0.36	+0.1
3,003,669	+		PGA1_c28680	0.38	-0.2
3,003,698	+		PGA1_c28680	0.40	-0.4
3,003,700	-		PGA1_c28680	0.40	+2.2
3,003,765	+		PGA1_c28680	0.42	-1.7
3,003,814	+		PGA1_c28680	0.44	-0.3
3,003,814	+		PGA1_c28680	0.44	+1.2
3,003,822	-		PGA1_c28680	0.44	+0.4
3,003,849	+		PGA1_c28680	0.45	-0.1
3,003,882	+		PGA1_c28680	0.47	+1.0
3,003,882	+		PGA1_c28680	0.47	+1.2
3,003,898	-		PGA1_c28680	0.47	-0.1
3,004,012	-		PGA1_c28680	0.52	+0.4
3,004,062	+		PGA1_c28680	0.54	-1.6
3,004,117	+		PGA1_c28680	0.56	-1.8
3,004,118	-		PGA1_c28680	0.56	+0.3
3,004,137	-		PGA1_c28680	0.57	-0.5
3,004,189	-		PGA1_c28680	0.59	+1.2
3,004,189	-		PGA1_c28680	0.59	-1.8
3,004,197	+		PGA1_c28680	0.59	+0.5
3,004,277	+		PGA1_c28680	0.62	+1.5
3,004,308	+		PGA1_c28680	0.63	-1.0
3,004,308	+		PGA1_c28680	0.63	-0.8
3,004,314	+		PGA1_c28680	0.63	-1.7
3,004,392	+		PGA1_c28680	0.66	+0.2
3,004,400	-		PGA1_c28680	0.67	-1.0
3,004,434	+		PGA1_c28680	0.68	+0.1
3,004,453	+		PGA1_c28680	0.69	-2.5
3,004,460	-		PGA1_c28680	0.69	+0.4
3,004,460	-		PGA1_c28680	0.69	+0.9
3,004,486	-		PGA1_c28680	0.70	+2.8
3,004,514	-		PGA1_c28680	0.71	-1.7
3,004,536	-		PGA1_c28680	0.72	-0.8
3,004,541	-		PGA1_c28680	0.72	-0.0
3,004,584	+		PGA1_c28680	0.74	-0.5
3,004,584	+		PGA1_c28680	0.74	-0.3
3,004,584	+		PGA1_c28680	0.74	-0.6
3,004,592	-		PGA1_c28680	0.74	-0.8
3,004,639	+		PGA1_c28680	0.76	+0.0
3,004,639	+		PGA1_c28680	0.76	-0.6
3,004,639	+		PGA1_c28680	0.76	+0.5
3,004,639	+		PGA1_c28680	0.76	+1.1
3,004,639	+		PGA1_c28680	0.76	+1.8
3,004,647	-		PGA1_c28680	0.76	-0.1
3,004,721	+		PGA1_c28680	0.79	-1.1
3,004,775	+		PGA1_c28680	0.81	-1.0
3,004,816	-		PGA1_c28680	0.83	+1.2
3,004,823	+		PGA1_c28680	0.83	-0.4
3,004,866	+		PGA1_c28680	0.85	+0.8
3,004,874	-		PGA1_c28680	0.85	-0.8
3,004,874	-		PGA1_c28680	0.85	+0.0
3,004,954	+		PGA1_c28680	0.88	+0.2
3,004,955	-		PGA1_c28680	0.88	+3.2
3,005,116	-				+1.2
3,005,118	+				+0.4
3,005,145	-				-1.5
3,005,335	+				-0.4
3,005,335	+				+0.2
3,005,343	-				+0.6
3,005,358	-				+0.9
3,005,407	-				+0.9
3,005,427	+				-0.4
3,005,435	-				-1.2
3,005,452	+				+0.2
3,005,463	+				-1.4
3,005,471	-				+1.0
3,005,478	+				+0.9
3,005,486	-				-0.3
3,005,495	+				+0.6
3,005,500	+				-0.3
3,005,518	-				-0.8
3,005,550	-				-0.1
3,005,550	-				-0.0
3,005,566	-				-1.2
3,005,607	-				+1.5
3,005,635	-				+0.9
3,005,682	-		PGA1_c28690	0.10	+0.2
3,005,735	+		PGA1_c28690	0.12	-1.7
3,005,735	+		PGA1_c28690	0.12	-1.2
3,005,735	+		PGA1_c28690	0.12	-0.1
3,005,735	+		PGA1_c28690	0.12	-1.6
3,005,736	-		PGA1_c28690	0.12	-0.9
3,005,743	-		PGA1_c28690	0.12	+1.2
3,005,743	-		PGA1_c28690	0.12	+0.5
3,005,748	+		PGA1_c28690	0.12	+1.5
3,005,772	+		PGA1_c28690	0.13	-1.5
3,005,777	+		PGA1_c28690	0.13	-0.8
3,005,785	-		PGA1_c28690	0.13	+1.0
3,005,795	+		PGA1_c28690	0.14	-0.9
3,005,803	-		PGA1_c28690	0.14	-0.0
3,005,821	-		PGA1_c28690	0.15	+1.0
3,005,837	-		PGA1_c28690	0.15	-0.1
3,005,837	-		PGA1_c28690	0.15	+1.9
3,005,837	-		PGA1_c28690	0.15	+0.3
3,005,837	-		PGA1_c28690	0.15	-0.7
3,005,851	+		PGA1_c28690	0.16	-0.5
3,005,873	-		PGA1_c28690	0.16	-0.4
3,005,886	+		PGA1_c28690	0.17	-0.1
3,005,886	+		PGA1_c28690	0.17	-0.2
3,005,894	-		PGA1_c28690	0.17	+0.2
3,005,894	-		PGA1_c28690	0.17	-0.6
3,005,894	-		PGA1_c28690	0.17	+1.3
3,005,916	-		PGA1_c28690	0.18	-0.5
3,005,953	+		PGA1_c28690	0.19	-0.1
3,005,955	-		PGA1_c28690	0.19	-0.1
3,006,085	-		PGA1_c28690	0.23	+0.3
3,006,182	+		PGA1_c28690	0.26	-1.6
3,006,190	-		PGA1_c28690	0.26	-1.3
3,006,190	-		PGA1_c28690	0.26	+1.2
3,006,190	-		PGA1_c28690	0.26	-1.1
3,006,190	-		PGA1_c28690	0.26	+0.1