Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01950 and PGA1_c01960 are separated by 14 nucleotides PGA1_c01960 and PGA1_c01970 are separated by 4 nucleotides PGA1_c01970 and PGA1_c01980 are separated by 229 nucleotides
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
PGA1_c01960: PGA1_c01960 - putative hydrolase, at 178,978 to 179,646
_c01960
PGA1_c01970: PGA1_c01970 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 179,651 to 180,358
_c01970
PGA1_c01980: PGA1_c01980 - glutamate/glutamine/aspartate/asparagine-binding protein BztA, at 180,588 to 181,604
_c01980
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.917 kb on + strand at 179.127 kb on + strand, within PGA1_c01960 at 179.127 kb on + strand, within PGA1_c01960 at 179.127 kb on + strand, within PGA1_c01960 at 179.135 kb on - strand, within PGA1_c01960 at 179.207 kb on - strand, within PGA1_c01960 at 179.236 kb on + strand, within PGA1_c01960 at 179.294 kb on - strand, within PGA1_c01960 at 179.355 kb on + strand, within PGA1_c01960 at 179.631 kb on + strand at 179.653 kb on - strand at 180.345 kb on - strand at 180.422 kb on + strand at 180.430 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.528 kb on - strand at 180.531 kb on + strand at 180.536 kb on + strand at 180.571 kb on + strand at 180.617 kb on + strand at 180.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 178,917 + +0.3 179,127 + PGA1_c01960 0.22 -1.1 179,127 + PGA1_c01960 0.22 +1.6 179,127 + PGA1_c01960 0.22 +0.5 179,135 - PGA1_c01960 0.23 +0.3 179,207 - PGA1_c01960 0.34 -0.5 179,236 + PGA1_c01960 0.39 +0.4 179,294 - PGA1_c01960 0.47 -2.1 179,355 + PGA1_c01960 0.56 -0.9 179,631 + +1.9 179,653 - -1.8 180,345 - +1.3 180,422 + -0.2 180,430 - -1.7 180,459 - -0.4 180,476 + +0.3 180,528 - +0.2 180,531 + -0.7 180,536 + -1.9 180,571 + -0.9 180,617 + -0.5 180,617 + -0.2
Or see this region's nucleotide sequence