Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12710

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
1,315,015	-				-0.1
1,315,030	-				+0.5
1,315,078	+				-0.5
1,315,159	+				-0.7
1,315,165	-				-0.8
1,315,198	-				-1.7
1,315,241	+				-0.3
1,315,372	+		PGA1_c12690	0.34	-1.5
1,315,377	+		PGA1_c12690	0.35	-0.7
1,315,474	+		PGA1_c12690	0.57	+1.7
1,315,474	+		PGA1_c12690	0.57	-2.6
1,315,476	+		PGA1_c12690	0.57	-0.3
1,315,482	-		PGA1_c12690	0.59	-0.3
1,315,482	-		PGA1_c12690	0.59	-1.6
1,315,508	+		PGA1_c12690	0.65	-2.2
1,315,561	-		PGA1_c12690	0.77	-1.1
1,315,590	+		PGA1_c12690	0.83	+0.9
1,315,590	+		PGA1_c12690	0.83	-1.6
1,315,598	-		PGA1_c12690	0.85	-0.2
1,315,598	-		PGA1_c12690	0.85	-3.5
1,315,598	-		PGA1_c12690	0.85	-0.8
1,315,609	+		PGA1_c12690	0.87	+1.1
1,315,658	+				-0.3
1,315,789	-		PGA1_c12700	0.38	+0.6
1,315,796	+		PGA1_c12700	0.40	+1.3
1,315,801	+		PGA1_c12700	0.42	-0.4
1,315,815	-		PGA1_c12700	0.46	-0.7
1,315,819	+		PGA1_c12700	0.47	-2.5
1,315,819	+		PGA1_c12700	0.47	-1.0
1,315,827	-		PGA1_c12700	0.49	-1.1
1,315,827	-		PGA1_c12700	0.49	-1.2
1,315,827	-		PGA1_c12700	0.49	-0.7
1,315,880	+		PGA1_c12700	0.65	-0.8
1,315,893	-		PGA1_c12700	0.69	-0.5
1,315,911	+		PGA1_c12700	0.74	-0.4
1,315,999	-				+0.4
1,316,116	+				-2.3
1,316,116	+				+1.3
1,316,116	+				-0.9
1,316,121	+				+0.3
1,316,205	+				-1.6
1,316,235	+				-0.6
1,316,235	+				-1.5
1,316,243	-				-2.9
1,316,243	-				-0.5
1,316,252	+				-0.6
1,316,414	+		PGA1_c12710	0.16	-2.7
1,316,414	+		PGA1_c12710	0.16	+0.5
1,316,414	+		PGA1_c12710	0.16	-1.1
1,316,422	-		PGA1_c12710	0.16	-1.0
1,316,462	+		PGA1_c12710	0.17	-1.1
1,316,474	+		PGA1_c12710	0.18	-1.5
1,316,492	-		PGA1_c12710	0.19	-1.1
1,316,595	+		PGA1_c12710	0.22	-2.2
1,316,603	-		PGA1_c12710	0.23	-3.8
1,316,706	+		PGA1_c12710	0.27	-1.2
1,316,752	+		PGA1_c12710	0.28	-1.2
1,316,835	-		PGA1_c12710	0.31	+0.4
1,316,943	+		PGA1_c12710	0.35	-1.9
1,316,943	+		PGA1_c12710	0.35	+0.1
1,316,956	+		PGA1_c12710	0.36	-1.5
1,316,964	-		PGA1_c12710	0.36	+0.5
1,316,992	+		PGA1_c12710	0.37	-1.9
1,316,992	+		PGA1_c12710	0.37	-1.5
1,317,000	-		PGA1_c12710	0.37	-1.6
1,317,086	+		PGA1_c12710	0.41	-0.5
1,317,094	-		PGA1_c12710	0.41	-1.7
1,317,094	-		PGA1_c12710	0.41	-1.2
1,317,094	-		PGA1_c12710	0.41	-1.4
1,317,096	+		PGA1_c12710	0.41	-0.6
1,317,110	+		PGA1_c12710	0.42	-0.2
1,317,125	+		PGA1_c12710	0.42	-1.4
1,317,185	+		PGA1_c12710	0.44	-1.5
1,317,290	-		PGA1_c12710	0.48	+1.9
1,317,327	-		PGA1_c12710	0.50	-0.6
1,317,327	-		PGA1_c12710	0.50	-0.5
1,317,367	+		PGA1_c12710	0.51	-2.0
1,317,389	-		PGA1_c12710	0.52	-0.3
1,317,412	+		PGA1_c12710	0.53	+0.0
1,317,447	+		PGA1_c12710	0.54	-0.3
1,317,447	+		PGA1_c12710	0.54	-1.5
1,317,470	-		PGA1_c12710	0.55	-0.6
1,317,474	+		PGA1_c12710	0.55	-1.1
1,317,532	+		PGA1_c12710	0.57	+0.4
1,317,535	-		PGA1_c12710	0.57	-2.3
1,317,556	-		PGA1_c12710	0.58	-1.3
1,317,561	+		PGA1_c12710	0.58	-2.1
1,317,561	+		PGA1_c12710	0.58	-0.0
1,317,561	+		PGA1_c12710	0.58	-1.8
1,317,569	-		PGA1_c12710	0.59	-0.7
1,317,599	+		PGA1_c12710	0.60	-1.1
1,317,756	-		PGA1_c12710	0.66	-1.2
1,317,876	-		PGA1_c12710	0.70	-1.0
1,317,881	+		PGA1_c12710	0.70	-0.7
1,317,944	-		PGA1_c12710	0.73	-1.1
1,318,151	+		PGA1_c12710	0.80	-1.7
1,318,328	+		PGA1_c12710	0.87	-3.0
1,318,328	+		PGA1_c12710	0.87	-1.8
1,318,328	+		PGA1_c12710	0.87	-1.1
1,318,328	+		PGA1_c12710	0.87	-1.6
1,318,328	+		PGA1_c12710	0.87	+0.0
1,318,331	-		PGA1_c12710	0.87	-0.5
1,318,333	+		PGA1_c12710	0.87	-1.0
1,318,336	-		PGA1_c12710	0.87	+0.5
1,318,336	-		PGA1_c12710	0.87	-1.6
1,318,348	+		PGA1_c12710	0.88	-2.1
1,318,389	-		PGA1_c12710	0.89	-1.9
1,318,549	+				-3.3
1,318,621	+				+0.1
1,318,628	-				-0.4
1,318,628	-				-0.1
1,318,628	-				-0.4
1,318,710	+				-0.1
1,318,710	+				+1.1
1,318,711	-				-2.3
1,318,720	+				+1.0
1,318,809	-				-2.3
1,318,833	+				-1.7
1,318,841	-				-0.8
1,318,862	+				+1.4
1,318,870	-				-0.2
1,318,870	-				-1.7
1,318,871	-				+1.3
1,318,878	-				-0.3
1,318,878	-				-1.6
1,318,878	-				+0.9
1,319,089	-		PGA1_c12720	0.24	+0.0
1,319,089	-		PGA1_c12720	0.24	+1.2
1,319,092	+		PGA1_c12720	0.24	-0.4
1,319,097	+		PGA1_c12720	0.25	-0.2
1,319,100	-		PGA1_c12720	0.25	-0.9
1,319,103	+		PGA1_c12720	0.25	+0.5
1,319,105	-		PGA1_c12720	0.25	-0.7
1,319,244	+		PGA1_c12720	0.35	-0.2
1,319,252	-		PGA1_c12720	0.36	+0.3
1,319,252	-		PGA1_c12720	0.36	+0.5
1,319,252	-		PGA1_c12720	0.36	+0.9
1,319,297	-		PGA1_c12720	0.39	+0.6
1,319,314	+		PGA1_c12720	0.40	+1.2
1,319,342	+		PGA1_c12720	0.42	+1.7
1,319,345	-		PGA1_c12720	0.43	-1.5
1,319,347	+		PGA1_c12720	0.43	-0.0
1,319,350	-		PGA1_c12720	0.43	+0.1
1,319,395	-		PGA1_c12720	0.46	-1.2
1,319,404	+		PGA1_c12720	0.47	-0.1
1,319,464	+		PGA1_c12720	0.51	-0.3
1,319,464	+		PGA1_c12720	0.51	+0.0
1,319,464	+		PGA1_c12720	0.51	-0.4
1,319,464	+		PGA1_c12720	0.51	+0.6
1,319,474	+		PGA1_c12720	0.52	+1.4
1,319,474	+		PGA1_c12720	0.52	-0.5
1,319,516	-		PGA1_c12720	0.55	+1.1
1,319,533	+		PGA1_c12720	0.56	-2.0
1,319,607	+		PGA1_c12720	0.62	+1.6
1,319,607	+		PGA1_c12720	0.62	-0.4
1,319,607	+		PGA1_c12720	0.62	+0.2
1,319,615	-		PGA1_c12720	0.62	-0.9
1,319,615	-		PGA1_c12720	0.62	-0.7
1,319,630	+		PGA1_c12720	0.63	-1.1
1,319,671	+		PGA1_c12720	0.66	-1.5
1,319,671	+		PGA1_c12720	0.66	-0.7