Strain Fitness in Shewanella amazonensis SB2B around Sama_3401

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
4,027,395	+		Sama_3400	0.36	-0.7
4,027,396	-		Sama_3400	0.36	-1.1
4,027,396	-		Sama_3400	0.36	-0.6
4,027,417	+		Sama_3400	0.38	-1.1
4,027,417	+		Sama_3400	0.38	-0.5
4,027,470	+		Sama_3400	0.42	+1.3
4,027,470	+		Sama_3400	0.42	-0.3
4,027,470	+		Sama_3400	0.42	-1.6
4,027,471	-		Sama_3400	0.42	+0.2
4,027,471	-		Sama_3400	0.42	+0.2
4,027,471	-		Sama_3400	0.42	-0.1
4,027,536	-		Sama_3400	0.47	+0.1
4,027,536	-		Sama_3400	0.47	+0.1
4,027,555	+		Sama_3400	0.49	+1.2
4,027,556	-		Sama_3400	0.49	+1.3
4,027,558	-		Sama_3400	0.49	-1.8
4,027,558	-		Sama_3400	0.49	+0.2
4,027,558	-		Sama_3400	0.49	-1.6
4,027,558	-		Sama_3400	0.49	-1.3
4,027,605	-		Sama_3400	0.53	-0.8
4,027,679	+		Sama_3400	0.59	-0.5
4,027,679	+		Sama_3400	0.59	-1.0
4,027,679	+		Sama_3400	0.59	-1.6
4,027,680	-		Sama_3400	0.59	+0.8
4,027,680	-		Sama_3400	0.59	+1.0
4,027,716	+		Sama_3400	0.62	-0.1
4,027,716	+		Sama_3400	0.62	-0.6
4,027,717	-		Sama_3400	0.62	+0.8
4,027,717	-		Sama_3400	0.62	+0.9
4,027,717	-		Sama_3400	0.62	+0.8
4,027,740	+		Sama_3400	0.64	-0.5
4,027,740	+		Sama_3400	0.64	-0.6
4,027,740	+		Sama_3400	0.64	+3.9
4,027,740	+		Sama_3400	0.64	+0.4
4,027,741	-		Sama_3400	0.64	+0.9
4,027,809	+		Sama_3400	0.70	-0.6
4,027,865	+		Sama_3400	0.74	+0.3
4,027,865	+		Sama_3400	0.74	-1.0
4,027,865	+		Sama_3400	0.74	-0.6
4,027,866	-		Sama_3400	0.74	-1.4
4,027,923	+		Sama_3400	0.79	-0.1
4,027,923	+		Sama_3400	0.79	+1.3
4,027,923	+		Sama_3400	0.79	-0.6
4,027,923	+		Sama_3400	0.79	+0.8
4,027,923	+		Sama_3400	0.79	-1.6
4,027,924	-		Sama_3400	0.79	+0.5
4,027,924	-		Sama_3400	0.79	+0.2
4,027,924	-		Sama_3400	0.79	-1.6
4,027,924	-		Sama_3400	0.79	+1.3
4,027,924	-		Sama_3400	0.79	-0.4
4,027,981	+		Sama_3400	0.84	+0.4
4,027,981	+		Sama_3400	0.84	+2.4
4,027,981	+		Sama_3400	0.84	-0.3
4,027,981	+		Sama_3400	0.84	+1.2
4,027,982	-		Sama_3400	0.84	-0.2
4,027,998	+		Sama_3400	0.85	+1.7
4,027,999	-		Sama_3400	0.85	-1.6
4,028,031	+		Sama_3400	0.88	-1.2
4,028,031	+		Sama_3400	0.88	+1.6
4,028,031	+		Sama_3400	0.88	+2.4
4,028,031	+		Sama_3400	0.88	+1.3
4,028,031	+		Sama_3400	0.88	-0.6
4,028,031	+		Sama_3400	0.88	+0.8
4,028,031	+		Sama_3400	0.88	+0.0
4,028,031	+		Sama_3400	0.88	-0.2
4,028,031	+		Sama_3400	0.88	-0.4
4,028,031	+		Sama_3400	0.88	-1.1
4,028,031	+		Sama_3400	0.88	+1.4
4,028,032	-		Sama_3400	0.88	+0.3
4,028,032	-		Sama_3400	0.88	+0.0
4,028,032	-		Sama_3400	0.88	-0.5
4,028,032	-		Sama_3400	0.88	+0.3
4,028,032	-		Sama_3400	0.88	-1.1
4,028,032	-		Sama_3400	0.88	+1.5
4,028,032	-		Sama_3400	0.88	+2.2
4,028,032	-		Sama_3400	0.88	-2.1
4,028,032	-		Sama_3400	0.88	-0.7
4,028,032	-		Sama_3400	0.88	-0.3
4,028,032	-		Sama_3400	0.88	-0.9
4,028,032	-		Sama_3400	0.88	+1.3
4,028,032	-		Sama_3400	0.88	-0.6
4,028,034	+		Sama_3400	0.88	+1.3
4,028,034	+		Sama_3400	0.88	-0.4
4,028,034	+		Sama_3400	0.88	+0.9
4,028,034	+		Sama_3400	0.88	+1.0
4,028,035	-		Sama_3400	0.88	-0.7
4,028,051	+		Sama_3400	0.89	+0.6
4,028,051	+		Sama_3400	0.89	+0.5
4,028,051	+		Sama_3400	0.89	+0.1
4,028,051	+		Sama_3400	0.89	+0.1
4,028,052	-		Sama_3400	0.90	+0.5
4,028,052	-		Sama_3400	0.90	-0.6
4,028,098	+				+1.2
4,028,098	+				-1.3
4,028,099	-				+0.7
4,028,099	-				+0.7
4,028,099	-				-1.2
4,028,107	+				+1.5
4,028,107	+				-0.8
4,028,107	+				-0.3
4,028,107	+				-0.0
4,028,107	+				-0.8
4,028,108	-				-1.0
4,028,108	-				-1.8
4,028,108	-				+0.8
4,028,179	+				+1.0
4,028,179	+				-0.3
4,028,179	+				-0.6
4,028,180	-				+0.4
4,028,180	-				-0.2
4,028,180	-				-0.8
4,028,180	-				-1.8
4,028,180	-				-0.8
4,028,180	-				+1.6
4,028,191	+				-1.2
4,028,191	+				-0.5
4,028,191	+				-1.6
4,028,191	+				+0.2
4,028,191	+				-2.0
4,028,191	+				+1.5
4,028,192	-				-0.0
4,028,192	-				-1.2
4,028,216	-				-0.7
4,028,220	+				+0.6
4,028,263	+				+0.4
4,028,264	-				+1.0
4,028,289	-				+0.5
4,028,325	+				-0.2
4,028,343	+				-0.4
4,028,343	+				-1.2
4,028,343	+				-1.0
4,028,344	-				+0.7
4,028,344	-				-1.4
4,028,344	-				-1.0
4,028,344	-				-0.2
4,028,344	-				+0.5
4,028,344	-				+0.9
4,028,344	-				+0.6
4,028,344	-				-2.4
4,028,344	-				+0.1
4,028,438	-		Sama_3401	0.26	+0.2
4,028,438	-		Sama_3401	0.26	-0.9
4,028,493	+		Sama_3401	0.38	-0.3
4,028,493	+		Sama_3401	0.38	-1.5
4,028,493	+		Sama_3401	0.38	-0.1
4,028,494	-		Sama_3401	0.38	-0.3
4,028,519	+		Sama_3401	0.44	+0.2
4,028,519	+		Sama_3401	0.44	+1.0
4,028,519	+		Sama_3401	0.44	+0.2
4,028,519	+		Sama_3401	0.44	-1.3
4,028,519	+		Sama_3401	0.44	+0.5
4,028,519	+		Sama_3401	0.44	-1.5
4,028,519	+		Sama_3401	0.44	-0.2
4,028,519	+		Sama_3401	0.44	+0.7
4,028,520	-		Sama_3401	0.44	-0.6
4,028,520	-		Sama_3401	0.44	-1.0
4,028,520	-		Sama_3401	0.44	+0.7
4,028,520	-		Sama_3401	0.44	-0.5
4,028,520	-		Sama_3401	0.44	+0.2
4,028,520	-		Sama_3401	0.44	-2.1
4,028,520	-		Sama_3401	0.44	-0.6
4,028,551	+		Sama_3401	0.51	+1.2
4,028,552	-		Sama_3401	0.51	-1.0
4,028,552	-		Sama_3401	0.51	+0.6
4,028,552	-		Sama_3401	0.51	-0.0
4,028,552	-		Sama_3401	0.51	+0.5
4,028,552	-		Sama_3401	0.51	-0.4
4,028,592	+		Sama_3401	0.60	-1.1
4,028,592	+		Sama_3401	0.60	-0.5
4,028,592	+		Sama_3401	0.60	+1.6
4,028,592	+		Sama_3401	0.60	-0.6
4,028,592	+		Sama_3401	0.60	+0.4
4,028,592	+		Sama_3401	0.60	+0.5
4,028,592	+		Sama_3401	0.60	+0.4
4,028,593	-		Sama_3401	0.61	+0.5
4,028,593	-		Sama_3401	0.61	-0.2
4,028,593	-		Sama_3401	0.61	-0.8
4,028,593	-		Sama_3401	0.61	-0.2
4,028,593	-		Sama_3401	0.61	-0.4
4,028,593	-		Sama_3401	0.61	+0.3
4,028,593	-		Sama_3401	0.61	-0.3
4,028,593	-		Sama_3401	0.61	+0.5
4,028,593	-		Sama_3401	0.61	-0.9
4,028,593	-		Sama_3401	0.61	-0.1
4,028,593	-		Sama_3401	0.61	-1.8
4,028,593	-		Sama_3401	0.61	-2.0
4,028,593	-		Sama_3401	0.61	+1.3
4,028,593	-		Sama_3401	0.61	+0.2
4,028,593	-		Sama_3401	0.61	-1.0
4,028,593	-		Sama_3401	0.61	-0.4
4,028,621	+		Sama_3401	0.67	-1.1
4,028,622	-		Sama_3401	0.67	-0.7
4,028,673	+		Sama_3401	0.79	+0.6
4,028,673	+		Sama_3401	0.79	-0.8
4,028,673	+		Sama_3401	0.79	-1.1
4,028,673	+		Sama_3401	0.79	+2.4
4,028,673	+		Sama_3401	0.79	-0.6
4,028,674	-		Sama_3401	0.79	-0.1
4,028,674	-		Sama_3401	0.79	-0.4
4,028,695	+		Sama_3401	0.84	+1.2
4,028,747	+				-0.6
4,028,747	+				-0.2
4,028,748	-				+1.3
4,028,748	-				-1.4
4,028,748	-				-0.3
4,028,748	-				+0.3
4,028,748	-				-0.1
4,028,748	-				+1.2
4,028,770	+				-1.1
4,028,770	+				+0.1
4,028,770	+				+0.2
4,028,770	+				-1.4
4,028,771	-				-0.0
4,028,771	-				+1.0
4,028,771	-				-0.6
4,028,771	-				+1.1
4,028,771	-				-0.2
4,028,771	-				+0.7
4,028,771	-				+1.7
4,028,771	-				-0.1
4,028,771	-				-0.3
4,028,771	-				+1.9
4,028,890	+		Sama_3402	0.28	-0.1
4,028,890	+		Sama_3402	0.28	-0.2
4,028,891	-		Sama_3402	0.28	-1.8
4,028,891	-		Sama_3402	0.28	+0.5
4,029,000	+		Sama_3402	0.53	+0.4
4,029,001	-		Sama_3402	0.53	-1.6
4,029,046	-		Sama_3402	0.63	-0.3
4,029,052	+		Sama_3402	0.65	+0.8
4,029,052	+		Sama_3402	0.65	-2.7
4,029,192	+				+0.8
4,029,192	+				-0.2
4,029,192	+				-1.1
4,029,192	+				+0.2
4,029,192	+				-1.1
4,029,193	-				+1.6
4,029,193	-				-0.2
4,029,193	-				-1.0
4,029,193	-				-0.6
4,029,211	+				+0.7
4,029,212	-				+0.8
4,029,248	+				-0.4
4,029,248	+				-0.1
4,029,249	-				-2.6
4,029,249	-				-2.7
4,029,249	-				-0.7
4,029,249	-				+0.3
4,029,424	-		Sama_3403	0.16	-1.0
4,029,424	-		Sama_3403	0.16	+0.7
4,029,434	+		Sama_3403	0.18	+0.3
4,029,434	+		Sama_3403	0.18	-1.1
4,029,434	+		Sama_3403	0.18	+0.4
4,029,434	+		Sama_3403	0.18	-0.7
4,029,434	+		Sama_3403	0.18	-2.0
4,029,435	-		Sama_3403	0.18	-0.1
4,029,435	-		Sama_3403	0.18	+1.5
4,029,435	-		Sama_3403	0.18	+0.2
4,029,435	-		Sama_3403	0.18	+0.4
4,029,534	+		Sama_3403	0.29	-0.2
4,029,535	-		Sama_3403	0.29	-1.6
4,029,549	+		Sama_3403	0.31	+0.5
4,029,554	+		Sama_3403	0.31	-0.1
4,029,554	+		Sama_3403	0.31	-0.4
4,029,554	+		Sama_3403	0.31	-0.4
4,029,554	+		Sama_3403	0.31	-0.1
4,029,554	+		Sama_3403	0.31	-0.7
4,029,555	-		Sama_3403	0.31	-0.4
4,029,555	-		Sama_3403	0.31	-0.4
4,029,555	-		Sama_3403	0.31	+1.2
4,029,555	-		Sama_3403	0.31	-1.0
4,029,555	-		Sama_3403	0.31	-0.1
4,029,555	-		Sama_3403	0.31	-1.4
4,029,555	-		Sama_3403	0.31	-1.1
4,029,555	-		Sama_3403	0.31	-0.7
4,029,555	-		Sama_3403	0.31	-1.1
4,029,618	+		Sama_3403	0.38	-0.5
4,029,705	+		Sama_3403	0.48	+1.0
4,029,705	+		Sama_3403	0.48	+0.7
4,029,716	+		Sama_3403	0.49	-0.6
4,029,717	-		Sama_3403	0.49	-0.7
4,029,762	+		Sama_3403	0.55	-0.6
4,029,762	+		Sama_3403	0.55	-1.5
4,029,762	+		Sama_3403	0.55	+0.3
4,029,762	+		Sama_3403	0.55	+0.3
4,029,762	+		Sama_3403	0.55	-0.2