Strain Fitness in Shewanella amazonensis SB2B around Sama_2905

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
3,452,078	-		Sama_2904	0.81	+0.0
3,452,102	-		Sama_2904	0.84	-1.2
3,452,102	-		Sama_2904	0.84	-1.8
3,452,109	-		Sama_2904	0.84	+0.5
3,452,109	-		Sama_2904	0.84	-0.9
3,452,156	+		Sama_2904	0.89	+0.5
3,452,157	-		Sama_2904	0.89	+0.6
3,452,157	-		Sama_2904	0.89	+1.1
3,452,166	+				+0.1
3,452,167	-				+0.1
3,452,229	+				+0.6
3,452,229	+				+1.3
3,452,229	+				-0.4
3,452,230	-				-1.0
3,452,230	-				-0.2
3,452,231	+				-0.8
3,452,253	+				-0.4
3,452,254	-				+0.3
3,452,254	-				-1.6
3,452,254	-				+0.8
3,452,254	-				+0.4
3,452,254	-				-0.6
3,452,273	-				-1.3
3,452,273	-				+0.1
3,452,342	+				-0.3
3,452,422	+				+1.1
3,452,423	-				-0.5
3,452,442	+				-0.4
3,452,442	+				+0.4
3,452,442	+				-0.7
3,452,442	+				-0.8
3,452,442	+				-1.9
3,452,443	-				+0.4
3,452,443	-				-1.6
3,452,443	-				+0.0
3,452,443	-				-2.0
3,452,481	-				+0.8
3,452,482	+				+0.2
3,452,482	+				+1.2
3,452,483	-				+0.6
3,452,483	-				+0.8
3,452,496	+				-1.5
3,452,496	+				-0.8
3,452,496	+				+0.1
3,452,497	-				-1.2
3,452,511	+				-0.4
3,452,511	+				-2.3
3,452,512	-				+0.7
3,452,512	-				-0.6
3,452,512	-				+1.1
3,452,562	+				+1.2
3,452,562	+				+0.3
3,452,562	+				-0.9
3,452,563	-				-0.6
3,452,563	-				-0.5
3,452,591	+				-1.9
3,452,592	-				-1.0
3,452,770	-				+0.8
3,452,770	-				+0.2
3,452,770	-				-0.1
3,452,780	+				-0.3
3,452,781	-				-1.1
3,452,783	-				+1.3
3,452,783	-				+0.3
3,452,786	+				-0.2
3,452,786	+				-1.7
3,452,787	-				-0.1
3,452,787	-				+0.7
3,452,787	-				-0.5
3,452,787	-				-0.1
3,452,787	-				-1.5
3,452,795	-				-0.5
3,452,795	-				-0.3
3,452,831	+				-0.2
3,452,831	+				-1.2
3,452,831	+				-0.6
3,452,833	+				-0.8
3,452,834	-				-0.1
3,452,834	-				+1.6
3,452,841	+				+0.2
3,452,842	-				-0.3
3,452,845	+				+0.9
3,452,846	-				-1.2
3,452,846	-				-0.5
3,452,846	-				+0.6
3,452,846	-				-2.0
3,452,847	+				-1.7
3,452,848	-				+0.3
3,452,848	-				+0.5
3,452,888	+				+0.7
3,452,889	-				+0.0
3,452,889	-				+0.9
3,452,889	-				+0.7
3,452,889	-				-2.4
3,452,889	-				-0.2
3,452,889	-				+1.4
3,452,891	+				-0.2
3,452,891	+				-1.3
3,452,891	+				+0.1
3,452,891	+				+0.3
3,452,891	+				+0.5
3,452,891	+				-1.1
3,452,892	-				+0.7
3,452,914	+				-1.8
3,452,914	+				+1.3
3,452,915	-				+1.5
3,452,915	-				-0.2
3,452,969	-				+0.8
3,453,002	-				-0.5
3,453,072	-				-0.7
3,453,072	-				+1.2
3,453,075	-				+2.0
3,453,094	-				-0.2
3,453,145	-		Sama_2905	0.11	+2.4
3,453,177	-		Sama_2905	0.14	+0.2
3,453,200	-		Sama_2905	0.17	+0.0
3,453,242	-		Sama_2905	0.21	+0.8
3,453,369	+		Sama_2905	0.34	-0.1
3,453,399	+		Sama_2905	0.37	+1.4
3,453,464	+		Sama_2905	0.43	-1.0
3,453,464	+		Sama_2905	0.43	-1.4
3,453,465	-		Sama_2905	0.43	+2.4
3,453,465	-		Sama_2905	0.43	-1.2
3,453,521	-		Sama_2905	0.49	-1.1
3,453,628	+		Sama_2905	0.60	+0.5
3,453,660	-		Sama_2905	0.63	+0.0
3,453,722	+		Sama_2905	0.69	+0.8
3,453,766	-		Sama_2905	0.73	+1.5
3,453,796	-		Sama_2905	0.76	+0.1
3,453,796	-		Sama_2905	0.76	-1.0
3,453,801	-		Sama_2905	0.77	+0.1
3,453,818	+		Sama_2905	0.79	-1.3
3,453,819	-		Sama_2905	0.79	-0.6
3,453,831	+		Sama_2905	0.80	+1.4
3,453,839	+		Sama_2905	0.81	-1.0
3,453,845	-		Sama_2905	0.81	-1.8
3,453,845	-		Sama_2905	0.81	-2.2
3,453,874	-		Sama_2905	0.84	-1.9
3,453,881	+		Sama_2905	0.85	-1.0
3,453,881	+		Sama_2905	0.85	-1.9
3,453,894	+		Sama_2905	0.86	-0.8
3,453,925	+		Sama_2905	0.89	+0.5
3,453,962	-				-1.0
3,453,962	-				-1.1
3,453,962	-				+0.3
3,453,965	+				-2.5
3,453,965	+				+0.2
3,453,965	+				+1.0
3,453,965	+				-1.5
3,453,965	+				-1.0
3,453,965	+				-0.2
3,453,965	+				-0.0
3,453,965	+				+2.6
3,453,965	+				+0.3
3,453,965	+				-0.1
3,453,966	-				+0.3
3,453,966	-				+1.2
3,453,966	-				+0.4
3,453,966	-				-0.3
3,453,966	-				-0.5
3,453,966	-				+0.0
3,453,966	-				-0.2
3,453,966	-				-1.0
3,453,966	-				-0.4
3,453,966	-				+0.0
3,453,966	-				-0.9
3,453,980	+				-1.0
3,453,981	-				+0.7
3,453,981	-				-0.4
3,454,065	+				+1.2
3,454,065	+				+0.4
3,454,066	-				+0.1
3,454,066	-				-0.0
3,454,066	-				-0.6
3,454,066	-				+0.3
3,454,066	-				+1.4
3,454,067	+				+0.1
3,454,067	+				+1.3
3,454,068	-				+0.5
3,454,068	-				+1.2
3,454,080	+				-0.5
3,454,081	-				+2.1
3,454,081	-				-0.6
3,454,081	-				+0.4
3,454,081	-				-0.5
3,454,081	-				+0.9
3,454,091	+				+1.0
3,454,092	-				-0.2
3,454,092	-				+0.1
3,454,092	-				-0.5
3,454,117	+				-1.0
3,454,117	+				+0.8
3,454,177	+				+0.2
3,454,177	+				+0.4
3,454,178	-		Sama_2906	0.10	-1.6
3,454,178	-		Sama_2906	0.10	-0.4
3,454,178	-		Sama_2906	0.10	+1.2
3,454,185	+		Sama_2906	0.11	-0.4
3,454,185	+		Sama_2906	0.11	-0.2
3,454,185	+		Sama_2906	0.11	-1.1
3,454,186	-		Sama_2906	0.11	+0.3
3,454,186	-		Sama_2906	0.11	-1.0
3,454,186	-		Sama_2906	0.11	+1.2
3,454,330	-		Sama_2906	0.25	+0.0
3,454,330	-		Sama_2906	0.25	-0.2
3,454,330	-		Sama_2906	0.25	-0.3
3,454,464	+		Sama_2906	0.39	-2.0
3,454,465	-		Sama_2906	0.39	+0.0
3,454,465	-		Sama_2906	0.39	-0.0
3,454,465	-		Sama_2906	0.39	+0.1
3,454,511	+		Sama_2906	0.44	-1.7
3,454,512	-		Sama_2906	0.44	-0.1
3,454,512	-		Sama_2906	0.44	+0.3
3,454,521	+		Sama_2906	0.45	-0.7
3,454,521	+		Sama_2906	0.45	-0.1
3,454,521	+		Sama_2906	0.45	-1.4
3,454,521	+		Sama_2906	0.45	-0.6
3,454,521	+		Sama_2906	0.45	+2.1
3,454,521	+		Sama_2906	0.45	-0.0
3,454,521	+		Sama_2906	0.45	+0.7
3,454,521	+		Sama_2906	0.45	-1.6
3,454,521	+		Sama_2906	0.45	-0.2
3,454,521	+		Sama_2906	0.45	-0.3
3,454,521	+		Sama_2906	0.45	-0.0
3,454,521	+		Sama_2906	0.45	-0.8
3,454,521	+		Sama_2906	0.45	+0.3
3,454,521	+		Sama_2906	0.45	-2.2
3,454,521	+		Sama_2906	0.45	-1.1
3,454,521	+		Sama_2906	0.45	-0.7
3,454,521	+		Sama_2906	0.45	+0.1
3,454,521	+		Sama_2906	0.45	-1.0
3,454,521	+		Sama_2906	0.45	+0.5
3,454,521	+		Sama_2906	0.45	-0.1
3,454,521	+		Sama_2906	0.45	+0.0
3,454,522	-		Sama_2906	0.45	-0.0
3,454,522	-		Sama_2906	0.45	-0.7
3,454,522	-		Sama_2906	0.45	+1.5
3,454,522	-		Sama_2906	0.45	-1.5
3,454,522	-		Sama_2906	0.45	+0.1
3,454,522	-		Sama_2906	0.45	-1.4
3,454,522	-		Sama_2906	0.45	+0.4
3,454,522	-		Sama_2906	0.45	+0.1
3,454,522	-		Sama_2906	0.45	-0.0
3,454,522	-		Sama_2906	0.45	-0.5
3,454,522	-		Sama_2906	0.45	-0.7
3,454,522	-		Sama_2906	0.45	-0.5
3,454,522	-		Sama_2906	0.45	+1.0
3,454,522	-		Sama_2906	0.45	-0.2
3,454,522	-		Sama_2906	0.45	+0.6
3,454,570	+		Sama_2906	0.50	-0.5
3,454,589	+		Sama_2906	0.52	+0.4
3,454,589	+		Sama_2906	0.52	+0.4
3,454,590	-		Sama_2906	0.52	+0.6
3,454,590	-		Sama_2906	0.52	+2.4
3,454,663	+		Sama_2906	0.59	-0.4
3,454,700	-		Sama_2906	0.63	-0.3
3,454,700	-		Sama_2906	0.63	-1.3
3,454,750	+		Sama_2906	0.68	+1.5
3,454,751	-		Sama_2906	0.68	-0.9
3,454,855	-		Sama_2906	0.78	+0.2
3,454,876	-		Sama_2906	0.81	+0.6
3,454,950	+		Sama_2906	0.88	-2.0
3,454,951	-		Sama_2906	0.88	+0.4
3,454,951	-		Sama_2906	0.88	-0.9
3,454,951	-		Sama_2906	0.88	+1.5
3,455,009	+				-1.5
3,455,010	-				-0.4
3,455,010	-				+1.5
3,455,019	+				-0.4
3,455,020	-				-1.6
3,455,020	-				-0.2
3,455,020	-				+0.3
3,455,020	-				-1.4
3,455,029	+				-0.1
3,455,029	+				-0.7