Strain Fitness in Shewanella amazonensis SB2B around Sama_2904

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
3,450,380	+		Sama_2902	0.49	-0.2
3,450,380	+		Sama_2902	0.49	+0.7
3,450,381	-		Sama_2902	0.49	-0.8
3,450,384	-		Sama_2902	0.50	-1.2
3,450,384	-		Sama_2902	0.50	-0.8
3,450,575	+				-1.2
3,450,575	+				-0.6
3,450,575	+				-1.3
3,450,576	-				-0.6
3,450,612	+				-0.4
3,450,612	+				-0.6
3,450,613	-				-1.2
3,450,613	-				+0.5
3,450,613	-				-0.2
3,450,613	-				-0.6
3,450,613	-				-1.1
3,450,613	-				-2.9
3,450,613	-				-0.4
3,450,629	+				-2.5
3,450,629	+				-0.9
3,450,629	+				+0.3
3,450,629	+				+0.0
3,450,630	-				+0.7
3,450,630	-				-0.4
3,450,630	-				-0.3
3,450,630	-				-1.1
3,450,630	-				-2.0
3,450,630	-				+3.3
3,450,630	-				-0.3
3,450,688	+				-0.2
3,450,688	+				+1.7
3,450,689	-				-0.7
3,450,689	-				+1.4
3,450,689	-				+0.8
3,450,754	+		Sama_2903	0.19	-1.2
3,450,754	+		Sama_2903	0.19	-1.7
3,450,754	+		Sama_2903	0.19	-0.4
3,450,755	-		Sama_2903	0.19	-2.4
3,450,755	-		Sama_2903	0.19	-1.6
3,450,755	-		Sama_2903	0.19	-1.0
3,450,755	-		Sama_2903	0.19	-1.6
3,450,793	-		Sama_2903	0.24	-0.2
3,450,793	-		Sama_2903	0.24	-1.7
3,450,793	-		Sama_2903	0.24	-1.4
3,450,793	-		Sama_2903	0.24	-0.0
3,450,857	+		Sama_2903	0.33	-0.2
3,450,858	-		Sama_2903	0.34	+0.5
3,450,858	-		Sama_2903	0.34	+0.4
3,450,858	-		Sama_2903	0.34	+0.0
3,450,888	+		Sama_2903	0.38	-1.1
3,450,898	+		Sama_2903	0.39	+0.8
3,450,898	+		Sama_2903	0.39	-0.0
3,450,898	+		Sama_2903	0.39	-0.9
3,450,898	+		Sama_2903	0.39	+1.1
3,450,973	+		Sama_2903	0.50	+0.1
3,450,973	+		Sama_2903	0.50	-0.0
3,450,973	+		Sama_2903	0.50	-0.4
3,450,973	+		Sama_2903	0.50	-0.7
3,450,973	+		Sama_2903	0.50	-0.7
3,450,973	+		Sama_2903	0.50	-1.2
3,450,973	+		Sama_2903	0.50	-0.7
3,450,973	+		Sama_2903	0.50	-1.5
3,450,974	-		Sama_2903	0.50	+1.6
3,450,974	-		Sama_2903	0.50	-1.0
3,450,974	-		Sama_2903	0.50	-0.7
3,450,974	-		Sama_2903	0.50	+0.4
3,450,974	-		Sama_2903	0.50	-0.9
3,450,976	-		Sama_2903	0.51	-0.2
3,451,033	+		Sama_2903	0.59	-1.1
3,451,034	-		Sama_2903	0.59	-1.1
3,451,066	+		Sama_2903	0.64	+0.5
3,451,066	+		Sama_2903	0.64	+0.4
3,451,066	+		Sama_2903	0.64	-0.3
3,451,066	+		Sama_2903	0.64	-0.5
3,451,066	+		Sama_2903	0.64	-0.3
3,451,066	+		Sama_2903	0.64	-0.6
3,451,066	+		Sama_2903	0.64	-1.4
3,451,067	-		Sama_2903	0.64	-1.3
3,451,067	-		Sama_2903	0.64	-0.7
3,451,067	-		Sama_2903	0.64	-0.0
3,451,067	-		Sama_2903	0.64	+0.1
3,451,067	-		Sama_2903	0.64	-1.9
3,451,067	-		Sama_2903	0.64	+0.6
3,451,067	-		Sama_2903	0.64	-0.5
3,451,067	-		Sama_2903	0.64	-0.3
3,451,067	-		Sama_2903	0.64	-2.0
3,451,067	-		Sama_2903	0.64	+0.4
3,451,067	-		Sama_2903	0.64	-1.3
3,451,067	-		Sama_2903	0.64	-1.5
3,451,068	+		Sama_2903	0.64	+1.7
3,451,068	+		Sama_2903	0.64	+0.6
3,451,069	-		Sama_2903	0.64	-0.4
3,451,069	-		Sama_2903	0.64	-0.1
3,451,069	-		Sama_2903	0.64	-1.4
3,451,069	-		Sama_2903	0.64	+1.0
3,451,224	+		Sama_2903	0.86	-0.7
3,451,224	+		Sama_2903	0.86	+0.3
3,451,241	-		Sama_2903	0.89	+0.8
3,451,284	+				-0.5
3,451,285	-				-0.3
3,451,295	+				-0.8
3,451,295	+				-0.5
3,451,295	+				-0.3
3,451,295	+				-0.1
3,451,295	+				-0.4
3,451,295	+				+0.1
3,451,296	-				-0.8
3,451,296	-				-0.7
3,451,296	-				+1.2
3,451,296	-				+0.2
3,451,296	-				-0.6
3,451,307	+				+0.4
3,451,307	+				+0.4
3,451,307	+				-1.4
3,451,307	+				-1.0
3,451,307	+				+1.0
3,451,308	-				+0.7
3,451,308	-				+1.2
3,451,308	-				-0.4
3,451,308	-				+0.0
3,451,308	-				+0.1
3,451,308	-				+0.4
3,451,308	-				-1.6
3,451,308	-				+0.9
3,451,308	-				+0.7
3,451,308	-				-0.3
3,451,308	-				-0.3
3,451,313	+				-2.5
3,451,314	-				+1.4
3,451,314	-				+0.6
3,451,314	-				+0.2
3,451,314	-				+0.6
3,451,342	+				+0.1
3,451,342	+				-0.6
3,451,343	-				-2.2
3,451,365	+				-0.4
3,451,365	+				+1.7
3,451,366	-				+1.0
3,451,366	-				-0.8
3,451,366	-				-1.2
3,451,366	-				-1.4
3,451,428	-		Sama_2904	0.12	-0.1
3,451,428	-		Sama_2904	0.12	+0.1
3,451,433	-		Sama_2904	0.13	-2.2
3,451,496	-		Sama_2904	0.19	-2.0
3,451,520	-		Sama_2904	0.22	+1.7
3,451,566	+		Sama_2904	0.27	+0.3
3,451,566	+		Sama_2904	0.27	+0.0
3,451,566	+		Sama_2904	0.27	-1.4
3,451,566	+		Sama_2904	0.27	-0.2
3,451,566	+		Sama_2904	0.27	-0.3
3,451,566	+		Sama_2904	0.27	+0.4
3,451,566	+		Sama_2904	0.27	+0.8
3,451,567	-		Sama_2904	0.27	+0.7
3,451,571	+		Sama_2904	0.27	+0.3
3,451,571	+		Sama_2904	0.27	-1.2
3,451,571	+		Sama_2904	0.27	-0.6
3,451,572	-		Sama_2904	0.27	+0.5
3,451,572	-		Sama_2904	0.27	+0.7
3,451,615	-		Sama_2904	0.32	-1.4
3,451,639	+		Sama_2904	0.35	+0.2
3,451,639	+		Sama_2904	0.35	-0.4
3,451,640	-		Sama_2904	0.35	-0.1
3,451,736	+		Sama_2904	0.45	+0.7
3,451,779	+		Sama_2904	0.49	+1.1
3,451,807	+		Sama_2904	0.52	+0.2
3,451,940	+		Sama_2904	0.66	-0.3
3,451,991	+		Sama_2904	0.72	-1.3
3,451,991	+		Sama_2904	0.72	+1.0
3,451,991	+		Sama_2904	0.72	-1.0
3,452,008	+		Sama_2904	0.74	-0.6
3,452,008	+		Sama_2904	0.74	-0.1
3,452,009	-		Sama_2904	0.74	-0.8
3,452,009	-		Sama_2904	0.74	-0.1
3,452,078	-		Sama_2904	0.81	+0.0
3,452,102	-		Sama_2904	0.84	-1.2
3,452,102	-		Sama_2904	0.84	-1.8
3,452,109	-		Sama_2904	0.84	+0.5
3,452,109	-		Sama_2904	0.84	-0.9
3,452,156	+		Sama_2904	0.89	+0.5
3,452,157	-		Sama_2904	0.89	+0.6
3,452,157	-		Sama_2904	0.89	+1.1
3,452,166	+				+0.1
3,452,167	-				+0.1
3,452,229	+				+0.6
3,452,229	+				+1.3
3,452,229	+				-0.4
3,452,230	-				-1.0
3,452,230	-				-0.2
3,452,231	+				-0.8
3,452,253	+				-0.4
3,452,254	-				+0.3
3,452,254	-				-1.6
3,452,254	-				+0.8
3,452,254	-				+0.4
3,452,254	-				-0.6
3,452,273	-				-1.3
3,452,273	-				+0.1
3,452,342	+				-0.3
3,452,422	+				+1.1
3,452,423	-				-0.5
3,452,442	+				-0.4
3,452,442	+				+0.4
3,452,442	+				-0.7
3,452,442	+				-0.8
3,452,442	+				-1.9
3,452,443	-				+0.4
3,452,443	-				-1.6
3,452,443	-				+0.0
3,452,443	-				-2.0
3,452,481	-				+0.8
3,452,482	+				+0.2
3,452,482	+				+1.2
3,452,483	-				+0.6
3,452,483	-				+0.8
3,452,496	+				-1.5
3,452,496	+				-0.8
3,452,496	+				+0.1
3,452,497	-				-1.2
3,452,511	+				-0.4
3,452,511	+				-2.3
3,452,512	-				+0.7
3,452,512	-				-0.6
3,452,512	-				+1.1
3,452,562	+				+1.2
3,452,562	+				+0.3
3,452,562	+				-0.9
3,452,563	-				-0.6
3,452,563	-				-0.5
3,452,591	+				-1.9
3,452,592	-				-1.0
3,452,770	-				+0.8
3,452,770	-				+0.2
3,452,770	-				-0.1
3,452,780	+				-0.3
3,452,781	-				-1.1
3,452,783	-				+1.3
3,452,783	-				+0.3
3,452,786	+				-0.2
3,452,786	+				-1.7
3,452,787	-				-0.1
3,452,787	-				+0.7
3,452,787	-				-0.5
3,452,787	-				-0.1
3,452,787	-				-1.5
3,452,795	-				-0.5
3,452,795	-				-0.3
3,452,831	+				-0.2
3,452,831	+				-1.2
3,452,831	+				-0.6
3,452,833	+				-0.8
3,452,834	-				-0.1
3,452,834	-				+1.6
3,452,841	+				+0.2
3,452,842	-				-0.3
3,452,845	+				+0.9
3,452,846	-				-1.2
3,452,846	-				-0.5
3,452,846	-				+0.6
3,452,846	-				-2.0
3,452,847	+				-1.7
3,452,848	-				+0.3
3,452,848	-				+0.5
3,452,888	+				+0.7
3,452,889	-				+0.0
3,452,889	-				+0.9
3,452,889	-				+0.7
3,452,889	-				-2.4
3,452,889	-				-0.2
3,452,889	-				+1.4
3,452,891	+				-0.2
3,452,891	+				-1.3
3,452,891	+				+0.1
3,452,891	+				+0.3
3,452,891	+				+0.5
3,452,891	+				-1.1
3,452,892	-				+0.7
3,452,914	+				-1.8
3,452,914	+				+1.3
3,452,915	-				+1.5
3,452,915	-				-0.2
3,452,969	-				+0.8
3,453,002	-				-0.5
3,453,072	-				-0.7
3,453,072	-				+1.2
3,453,075	-				+2.0
3,453,094	-				-0.2
3,453,145	-		Sama_2905	0.11	+2.4
3,453,177	-		Sama_2905	0.14	+0.2
3,453,200	-		Sama_2905	0.17	+0.0
3,453,242	-		Sama_2905	0.21	+0.8