Strain Fitness in Shewanella amazonensis SB2B around Sama_2885

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
3,424,922	+				-0.4
3,424,922	+				-0.3
3,424,923	-				+1.0
3,424,923	-				-0.8
3,424,926	-		Sama_2884	0.10	+1.0
3,424,935	+		Sama_2884	0.11	-0.4
3,424,935	+		Sama_2884	0.11	-0.4
3,424,936	-		Sama_2884	0.11	+0.4
3,424,936	-		Sama_2884	0.11	+0.6
3,424,936	-		Sama_2884	0.11	-0.2
3,424,936	-		Sama_2884	0.11	-0.3
3,424,937	+		Sama_2884	0.11	+0.3
3,424,938	-		Sama_2884	0.12	-0.4
3,425,042	+		Sama_2884	0.24	-0.5
3,425,043	-		Sama_2884	0.24	-0.1
3,425,043	-		Sama_2884	0.24	-0.0
3,425,043	-		Sama_2884	0.24	-0.6
3,425,043	-		Sama_2884	0.24	+1.4
3,425,049	+		Sama_2884	0.25	+0.7
3,425,049	+		Sama_2884	0.25	+0.5
3,425,049	+		Sama_2884	0.25	+0.9
3,425,049	+		Sama_2884	0.25	-2.0
3,425,049	+		Sama_2884	0.25	+0.8
3,425,049	+		Sama_2884	0.25	-0.3
3,425,050	-		Sama_2884	0.25	-0.2
3,425,050	-		Sama_2884	0.25	-0.2
3,425,050	-		Sama_2884	0.25	-0.5
3,425,050	-		Sama_2884	0.25	+1.1
3,425,053	+		Sama_2884	0.25	-0.1
3,425,053	+		Sama_2884	0.25	-0.5
3,425,054	-		Sama_2884	0.25	-0.4
3,425,054	-		Sama_2884	0.25	+2.2
3,425,054	-		Sama_2884	0.25	+0.2
3,425,087	+		Sama_2884	0.29	+0.2
3,425,087	+		Sama_2884	0.29	+0.2
3,425,088	-		Sama_2884	0.29	+2.3
3,425,088	-		Sama_2884	0.29	-0.5
3,425,088	-		Sama_2884	0.29	+0.5
3,425,088	-		Sama_2884	0.29	-0.2
3,425,120	-		Sama_2884	0.33	-0.2
3,425,160	+		Sama_2884	0.38	+0.8
3,425,161	-		Sama_2884	0.38	+0.6
3,425,184	-		Sama_2884	0.41	+3.2
3,425,184	-		Sama_2884	0.41	+1.7
3,425,222	+		Sama_2884	0.45	-0.2
3,425,222	+		Sama_2884	0.45	-0.7
3,425,222	+		Sama_2884	0.45	+0.7
3,425,223	-		Sama_2884	0.45	-1.0
3,425,223	-		Sama_2884	0.45	-0.1
3,425,223	-		Sama_2884	0.45	-0.6
3,425,223	-		Sama_2884	0.45	-0.2
3,425,240	+		Sama_2884	0.47	-1.1
3,425,241	-		Sama_2884	0.47	+1.4
3,425,241	-		Sama_2884	0.47	+0.9
3,425,357	+		Sama_2884	0.61	+1.5
3,425,357	+		Sama_2884	0.61	-0.4
3,425,358	-		Sama_2884	0.61	+0.8
3,425,358	-		Sama_2884	0.61	+0.1
3,425,358	-		Sama_2884	0.61	-0.4
3,425,373	+		Sama_2884	0.63	-1.9
3,425,374	-		Sama_2884	0.63	-1.0
3,425,374	-		Sama_2884	0.63	+1.2
3,425,388	+		Sama_2884	0.65	+0.0
3,425,389	-		Sama_2884	0.65	-1.0
3,425,399	+		Sama_2884	0.66	-1.1
3,425,420	-		Sama_2884	0.69	-3.3
3,425,453	+		Sama_2884	0.72	-1.2
3,425,453	+		Sama_2884	0.72	-1.1
3,425,454	-		Sama_2884	0.73	+0.2
3,425,513	+		Sama_2884	0.80	-0.5
3,425,513	+		Sama_2884	0.80	-0.2
3,425,514	-		Sama_2884	0.80	-1.3
3,425,532	+		Sama_2884	0.82	+0.0
3,425,532	+		Sama_2884	0.82	+0.5
3,425,532	+		Sama_2884	0.82	-0.2
3,425,569	+		Sama_2884	0.86	+0.5
3,425,569	+		Sama_2884	0.86	-1.4
3,425,569	+		Sama_2884	0.86	+0.4
3,425,569	+		Sama_2884	0.86	-1.0
3,425,570	-		Sama_2884	0.86	+0.8
3,425,570	-		Sama_2884	0.86	-0.0
3,425,570	-		Sama_2884	0.86	-0.3
3,425,612	+				-1.1
3,425,773	-				+0.9
3,425,793	+				+0.1
3,425,793	+				-0.3
3,425,793	+				-1.9
3,425,794	-				+0.7
3,425,794	-				-0.1
3,425,794	-				-0.6
3,425,794	-				-0.8
3,425,794	-				-1.7
3,425,795	+				+0.7
3,425,796	-				-2.6
3,425,796	-				+0.4
3,425,796	-				+1.9
3,425,796	-				-0.6
3,425,812	-				+0.7
3,425,835	+				-1.1
3,425,838	+				+0.3
3,425,838	+				-1.8
3,425,838	+				-1.2
3,425,938	+		Sama_2885	0.39	-1.9
3,425,939	-		Sama_2885	0.40	+0.1
3,425,939	-		Sama_2885	0.40	-0.7
3,425,948	+		Sama_2885	0.45	-1.3
3,425,948	+		Sama_2885	0.45	-0.1
3,425,948	+		Sama_2885	0.45	-1.9
3,425,949	-		Sama_2885	0.45	-1.6
3,425,949	-		Sama_2885	0.45	+3.3
3,425,949	-		Sama_2885	0.45	-1.2
3,425,949	-		Sama_2885	0.45	-0.1
3,425,949	-		Sama_2885	0.45	-0.4
3,425,949	-		Sama_2885	0.45	-3.3
3,426,058	+				-0.2
3,426,058	+				+1.0
3,426,059	-				-0.2
3,426,059	-				+0.3
3,426,059	-				-2.0
3,426,062	-				-0.1
3,426,070	-				-2.3
3,426,084	-				+1.1
3,426,084	-				-1.2
3,426,084	-				+1.4
3,426,084	-				-0.0
3,426,084	-				+0.8
3,426,084	-				-0.0
3,426,113	+				-1.2
3,426,114	-				+0.4
3,426,114	-				+1.3
3,426,132	+				-1.6
3,426,133	-				-1.1
3,426,133	-				+0.8
3,426,133	-				-0.7
3,426,133	-				-2.4
3,426,147	-				-0.3
3,426,164	+				-0.9
3,426,164	+				-0.6
3,426,165	-				-0.9
3,426,165	-				+0.2
3,426,165	-				+1.3
3,426,167	+				-0.7
3,426,168	-				+1.1
3,426,173	+				+1.1
3,426,197	+				-0.4
3,426,203	+				+0.3
3,426,203	+				-0.9
3,426,203	+				-3.6
3,426,203	+				-0.6
3,426,316	-				-1.1
3,426,341	+				-1.0
3,426,343	+				+0.4
3,426,343	+				-1.0
3,426,344	-				-1.3
3,426,344	-				+1.3
3,426,379	-				-0.5
3,426,379	-				-0.2
3,426,390	+				-1.9
3,426,423	-				-0.4
3,426,430	+				-0.4
3,426,431	-				-0.8
3,426,431	-				+0.9
3,426,431	-				+1.1
3,426,433	+				-0.9
3,426,433	+				+1.3
3,426,434	-				-1.0
3,426,458	-				-0.5
3,426,485	+				-0.6
3,426,486	-				-0.0
3,426,486	-				-0.4
3,426,492	-				-0.9
3,426,498	-				+1.0
3,426,515	+				-0.6
3,426,515	+				-1.8
3,426,516	-				+1.1
3,426,516	-				+0.7
3,426,516	-				-1.7
3,426,519	+				-2.7
3,426,519	+				-2.2
3,426,519	+				+0.7
3,426,520	-				-0.6
3,426,520	-				-0.4
3,426,520	-				-0.7
3,426,520	-				-0.7
3,426,520	-				+1.0
3,426,520	-				-0.5
3,426,522	-				+3.0
3,426,522	-				-0.5
3,426,537	-				+1.1
3,426,660	-				-0.2
3,426,662	+				-0.0
3,426,662	+				+1.7
3,426,662	+				+0.3
3,426,662	+				-0.1
3,426,685	+				-0.0
3,426,728	+		Sama_2886	0.15	-1.1
3,426,728	+		Sama_2886	0.15	+0.1
3,426,728	+		Sama_2886	0.15	+0.8
3,426,728	+		Sama_2886	0.15	+0.5
3,426,728	+		Sama_2886	0.15	-1.6
3,426,729	-		Sama_2886	0.16	-0.1
3,426,729	-		Sama_2886	0.16	-0.1
3,426,729	-		Sama_2886	0.16	+0.9
3,426,729	-		Sama_2886	0.16	-0.6
3,426,737	-		Sama_2886	0.17	-0.5
3,426,750	+		Sama_2886	0.19	-1.2
3,426,751	-		Sama_2886	0.19	+0.8
3,426,751	-		Sama_2886	0.19	-0.1
3,426,847	+		Sama_2886	0.33	+0.0
3,426,847	+		Sama_2886	0.33	-0.9
3,426,847	+		Sama_2886	0.33	+1.0
3,426,847	+		Sama_2886	0.33	+0.0
3,426,848	-		Sama_2886	0.33	-1.2
3,426,848	-		Sama_2886	0.33	+0.5
3,426,848	-		Sama_2886	0.33	-1.5
3,426,849	+		Sama_2886	0.33	+0.0
3,426,849	+		Sama_2886	0.33	+0.7
3,426,849	+		Sama_2886	0.33	+0.4
3,426,849	+		Sama_2886	0.33	+0.1
3,426,849	+		Sama_2886	0.33	-1.6
3,426,849	+		Sama_2886	0.33	-1.2
3,426,849	+		Sama_2886	0.33	-0.9
3,426,849	+		Sama_2886	0.33	+0.4
3,426,849	+		Sama_2886	0.33	-0.7
3,426,849	+		Sama_2886	0.33	-1.2
3,426,850	-		Sama_2886	0.33	-0.1
3,426,850	-		Sama_2886	0.33	-2.2
3,426,850	-		Sama_2886	0.33	-0.2
3,426,850	-		Sama_2886	0.33	-1.8
3,426,850	-		Sama_2886	0.33	-0.5
3,426,850	-		Sama_2886	0.33	+1.8
3,426,850	-		Sama_2886	0.33	-1.9
3,426,859	+		Sama_2886	0.35	+0.2
3,426,859	+		Sama_2886	0.35	-0.1
3,426,859	+		Sama_2886	0.35	-1.1
3,426,859	+		Sama_2886	0.35	+0.5
3,426,859	+		Sama_2886	0.35	-1.7
3,426,859	+		Sama_2886	0.35	-0.2
3,426,860	-		Sama_2886	0.35	+1.8
3,426,860	-		Sama_2886	0.35	-0.3
3,426,860	-		Sama_2886	0.35	-0.2
3,426,860	-		Sama_2886	0.35	+0.6
3,426,860	-		Sama_2886	0.35	+0.5
3,426,860	-		Sama_2886	0.35	+0.4
3,426,860	-		Sama_2886	0.35	+0.3
3,426,862	+		Sama_2886	0.35	-1.0
3,426,862	+		Sama_2886	0.35	+0.1
3,426,862	+		Sama_2886	0.35	+1.4
3,426,862	+		Sama_2886	0.35	+0.0
3,426,862	+		Sama_2886	0.35	-1.6
3,426,862	+		Sama_2886	0.35	-2.1
3,426,862	+		Sama_2886	0.35	-1.4
3,426,863	-		Sama_2886	0.35	-1.8
3,426,863	-		Sama_2886	0.35	-0.1
3,426,863	-		Sama_2886	0.35	+0.5
3,426,863	-		Sama_2886	0.35	-0.3
3,426,863	-		Sama_2886	0.35	+1.2
3,426,863	-		Sama_2886	0.35	-0.7
3,426,863	-		Sama_2886	0.35	-0.2
3,426,863	-		Sama_2886	0.35	-0.4
3,426,873	+		Sama_2886	0.37	+2.4
3,426,873	+		Sama_2886	0.37	-1.4
3,426,874	-		Sama_2886	0.37	+0.0
3,426,874	-		Sama_2886	0.37	-0.4
3,426,895	+		Sama_2886	0.40	-1.6
3,426,895	+		Sama_2886	0.40	-0.9
3,426,896	-		Sama_2886	0.40	-0.4
3,426,896	-		Sama_2886	0.40	-0.4
3,426,896	-		Sama_2886	0.40	+0.3
3,426,897	+		Sama_2886	0.40	+1.8
3,426,897	+		Sama_2886	0.40	-0.2
3,426,897	+		Sama_2886	0.40	-1.5
3,426,897	+		Sama_2886	0.40	-0.1
3,426,898	-		Sama_2886	0.41	+1.5
3,426,898	-		Sama_2886	0.41	-0.4
3,426,898	-		Sama_2886	0.41	-0.5
3,426,898	-		Sama_2886	0.41	+0.2
3,426,898	-		Sama_2886	0.41	-0.7
3,426,898	-		Sama_2886	0.41	+0.6
3,426,898	-		Sama_2886	0.41	+0.4
3,426,898	-		Sama_2886	0.41	-0.5
3,426,898	-		Sama_2886	0.41	+1.0
3,426,898	-		Sama_2886	0.41	-1.1
3,426,916	+		Sama_2886	0.43	-0.7
3,426,916	+		Sama_2886	0.43	-1.7
3,426,916	+		Sama_2886	0.43	-0.6
3,426,916	+		Sama_2886	0.43	-1.1
3,426,916	+		Sama_2886	0.43	+1.0
3,426,917	-		Sama_2886	0.43	-3.1
3,427,007	+		Sama_2886	0.57	+0.2
3,427,008	-		Sama_2886	0.57	-0.0
3,427,031	+		Sama_2886	0.60	+0.3
3,427,044	+		Sama_2886	0.62	-0.4
3,427,045	-		Sama_2886	0.62	-0.7