Strain Fitness in Shewanella amazonensis SB2B around Sama_2742

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
3,275,450	+				+0.3
3,275,450	+				-0.8
3,275,451	-				+0.0
3,275,503	+				-1.2
3,275,503	+				-0.3
3,275,515	+				-0.7
3,275,516	-				-1.2
3,275,516	-				-0.3
3,275,516	-				-1.4
3,275,564	+				-0.2
3,275,565	-				-0.5
3,275,594	-				+0.5
3,275,594	-				+1.3
3,275,594	-				-0.6
3,275,804	-		Sama_2741	0.32	-0.2
3,275,804	-		Sama_2741	0.32	+1.7
3,275,861	+		Sama_2741	0.39	+0.4
3,275,867	-		Sama_2741	0.40	+0.1
3,275,867	-		Sama_2741	0.40	-0.2
3,275,929	+		Sama_2741	0.49	+0.4
3,275,929	+		Sama_2741	0.49	-1.3
3,275,929	+		Sama_2741	0.49	+0.8
3,275,929	+		Sama_2741	0.49	-0.2
3,275,929	+		Sama_2741	0.49	+1.8
3,275,930	-		Sama_2741	0.49	+0.6
3,275,930	-		Sama_2741	0.49	+0.9
3,275,930	-		Sama_2741	0.49	+0.5
3,275,936	+		Sama_2741	0.49	+0.2
3,275,936	+		Sama_2741	0.49	-1.1
3,275,937	-		Sama_2741	0.50	+2.1
3,276,019	+		Sama_2741	0.61	-0.7
3,276,020	-		Sama_2741	0.61	+1.4
3,276,158	+		Sama_2741	0.79	+1.4
3,276,159	-		Sama_2741	0.79	+0.8
3,276,219	+		Sama_2741	0.88	-0.1
3,276,219	+		Sama_2741	0.88	+0.1
3,276,220	-		Sama_2741	0.88	+2.5
3,276,220	-		Sama_2741	0.88	+1.6
3,276,261	+				+1.4
3,276,261	+				+0.2
3,276,261	+				-1.5
3,276,262	-				-1.1
3,276,262	-				-1.4
3,276,262	-				-0.8
3,276,262	-				-2.1
3,276,262	-				-0.0
3,276,262	-				+0.6
3,276,262	-				+0.7
3,276,309	+				+0.0
3,276,309	+				+0.0
3,276,342	+				-0.3
3,276,342	+				+1.1
3,276,342	+				+0.0
3,276,342	+				+0.6
3,276,342	+				-0.3
3,276,342	+				+0.1
3,276,342	+				+0.9
3,276,342	+				-0.4
3,276,342	+				+0.8
3,276,342	+				-2.8
3,276,342	+				-0.4
3,276,342	+				+0.4
3,276,342	+				-1.1
3,276,342	+				-1.1
3,276,342	+				+0.0
3,276,342	+				-1.1
3,276,342	+				-0.2
3,276,343	-				-0.4
3,276,343	-				-0.8
3,276,343	-				+0.2
3,276,343	-				-0.7
3,276,343	-				-0.4
3,276,343	-				+1.0
3,276,343	-				+2.6
3,276,343	-				+0.2
3,276,343	-				-0.9
3,276,344	+				+1.2
3,276,344	+				+0.6
3,276,344	+				-0.9
3,276,360	-				-0.4
3,276,360	-				+1.6
3,276,364	+				-0.2
3,276,365	-				-0.4
3,276,365	-				-0.7
3,276,381	+				+1.4
3,276,381	+				+1.4
3,276,381	+				+0.2
3,276,382	-				-2.1
3,276,496	+				+0.0
3,276,609	+		Sama_2742	0.13	+1.4
3,276,742	+		Sama_2742	0.20	+0.4
3,276,825	+		Sama_2742	0.24	+3.4
3,277,044	+		Sama_2742	0.36	+2.4
3,277,044	+		Sama_2742	0.36	+1.4
3,277,044	+		Sama_2742	0.36	+1.1
3,277,045	-		Sama_2742	0.36	+1.3
3,277,132	+		Sama_2742	0.41	-0.2
3,277,183	+		Sama_2742	0.44	+0.3
3,277,184	-		Sama_2742	0.44	-1.8
3,277,198	+		Sama_2742	0.45	+2.0
3,277,199	-		Sama_2742	0.45	+2.3
3,277,199	-		Sama_2742	0.45	+0.7
3,277,357	+		Sama_2742	0.53	+1.9
3,277,361	+		Sama_2742	0.53	+1.6
3,277,361	+		Sama_2742	0.53	-1.1
3,277,361	+		Sama_2742	0.53	+1.4
3,277,361	+		Sama_2742	0.53	+1.6
3,277,361	+		Sama_2742	0.53	-0.8
3,277,361	+		Sama_2742	0.53	-1.0
3,277,361	+		Sama_2742	0.53	-0.1
3,277,362	-		Sama_2742	0.53	+0.8
3,277,362	-		Sama_2742	0.53	+1.2
3,277,362	-		Sama_2742	0.53	+0.9
3,277,362	-		Sama_2742	0.53	+1.5
3,277,362	-		Sama_2742	0.53	+2.0
3,277,463	+		Sama_2742	0.59	+0.1
3,277,463	+		Sama_2742	0.59	+1.0
3,277,466	-		Sama_2742	0.59	+2.4
3,277,466	-		Sama_2742	0.59	-0.6
3,277,466	-		Sama_2742	0.59	+2.8
3,277,466	-		Sama_2742	0.59	+0.1
3,277,774	+		Sama_2742	0.76	+0.1
3,277,816	+		Sama_2742	0.78	+1.1
3,277,817	-		Sama_2742	0.78	+0.4
3,277,832	+		Sama_2742	0.79	-1.8
3,277,832	+		Sama_2742	0.79	-1.0
3,277,832	+		Sama_2742	0.79	+0.0
3,277,833	-		Sama_2742	0.79	-0.5
3,277,833	-		Sama_2742	0.79	+0.7
3,277,833	-		Sama_2742	0.79	-0.8
3,277,921	+		Sama_2742	0.84	-0.6
3,278,036	+				-1.8
3,278,036	+				-0.1
3,278,037	-				+0.6
3,278,037	-				+0.1
3,278,037	-				-1.6
3,278,038	+				+0.7
3,278,038	+				+0.4
3,278,039	-				-1.2
3,278,039	-				+0.2
3,278,108	+				+0.4
3,278,109	-				+1.9
3,278,109	-				+0.5
3,278,109	-				+0.7
3,278,110	+				+1.0
3,278,110	+				-0.1
3,278,110	+				-0.6
3,278,111	-				+0.2
3,278,131	+				-1.1
3,278,131	+				+0.1
3,278,132	-				-1.1
3,278,304	-				+0.1
3,278,313	+				-0.7
3,278,314	-				-0.7
3,278,314	-				+0.3
3,278,357	-				-1.0
3,278,372	+				-1.5
3,278,374	+				+0.9
3,278,374	+				+0.4
3,278,374	+				-0.2
3,278,375	-				-0.7
3,278,375	-				+0.6
3,278,392	-				+0.2
3,278,392	-				+0.5
3,278,396	+				+0.4
3,278,397	-				-0.2
3,278,397	-				-0.6
3,278,397	-				-0.6
3,278,397	-				-0.2
3,278,412	+				+1.4
3,278,412	+				+1.5
3,278,412	+				-0.8
3,278,412	+				-0.1
3,278,412	+				-0.5
3,278,412	+				+1.0
3,278,412	+				+0.6
3,278,412	+				-1.3
3,278,412	+				-0.4
3,278,412	+				+1.2
3,278,412	+				-0.3
3,278,413	-				+1.4
3,278,413	-				-1.4
3,278,413	-				-0.6
3,278,413	-				+1.1
3,278,413	-				+1.2
3,278,413	-				+1.2
3,278,413	-				+0.5
3,278,413	-				-0.0
3,278,414	+				+0.5
3,278,414	+				-0.9
3,278,414	+				+1.5
3,278,414	+				-0.2
3,278,415	-				+0.1
3,278,415	-				+0.5
3,278,415	-				-0.1
3,278,415	-				-0.2
3,278,432	+				-0.3
3,278,433	-				-1.7
3,278,441	+				+0.4
3,278,441	+				+0.3
3,278,441	+				-1.2
3,278,441	+				-0.5
3,278,442	-				-0.1
3,278,442	-				+0.1
3,278,442	-				+0.7
3,278,442	-				-1.4
3,278,442	-				+1.5
3,278,442	-				-0.9
3,278,446	+				-0.2
3,278,446	+				+1.8
3,278,446	+				-1.0
3,278,446	+				-0.4
3,278,446	+				-2.6
3,278,447	-				-0.8
3,278,447	-				+1.4
3,278,447	-				-0.3
3,278,447	-				+1.0
3,278,453	+				+3.6
3,278,454	-				-0.2
3,278,454	-				+0.2
3,278,454	-				+1.6
3,278,465	+				+0.4
3,278,466	-				+2.5
3,278,466	-				-2.0
3,278,469	-				+0.4
3,278,484	-				+1.8
3,278,484	-				+0.2
3,278,500	+				+0.5
3,278,501	-				+0.5
3,278,501	-				-1.5
3,278,501	-				+0.6
3,278,558	+		Sama_2743	0.12	-0.3
3,278,558	+		Sama_2743	0.12	-1.0
3,278,558	+		Sama_2743	0.12	+0.5
3,278,559	-		Sama_2743	0.12	-1.2
3,278,559	-		Sama_2743	0.12	+1.0
3,278,611	-		Sama_2743	0.16	-0.4
3,278,621	+		Sama_2743	0.17	-0.6
3,278,622	-		Sama_2743	0.17	-1.6
3,278,633	+		Sama_2743	0.18	+0.2
3,278,633	+		Sama_2743	0.18	+0.9
3,278,633	+		Sama_2743	0.18	+1.5
3,278,677	+		Sama_2743	0.21	-1.2
3,278,678	-		Sama_2743	0.21	+0.6
3,278,678	-		Sama_2743	0.21	-0.6
3,278,678	-		Sama_2743	0.21	-0.9
3,278,678	-		Sama_2743	0.21	-1.3
3,278,678	-		Sama_2743	0.21	-0.4
3,278,678	-		Sama_2743	0.21	-0.5
3,278,748	+		Sama_2743	0.27	+1.7
3,278,748	+		Sama_2743	0.27	+0.2
3,278,749	-		Sama_2743	0.27	-0.6
3,278,853	+		Sama_2743	0.36	+0.8
3,278,854	-		Sama_2743	0.36	+1.0
3,278,888	+		Sama_2743	0.39	+1.0
3,278,889	-		Sama_2743	0.39	+0.9
3,278,925	+		Sama_2743	0.42	-0.6
3,278,926	-		Sama_2743	0.42	-0.6
3,278,926	-		Sama_2743	0.42	-0.5
3,278,926	-		Sama_2743	0.42	+0.5
3,278,926	-		Sama_2743	0.42	+1.4
3,278,958	-		Sama_2743	0.44	+1.8
3,278,998	+		Sama_2743	0.48	-0.7
3,278,999	-		Sama_2743	0.48	+1.4
3,278,999	-		Sama_2743	0.48	-0.9
3,278,999	-		Sama_2743	0.48	+0.1
3,279,030	+		Sama_2743	0.50	+1.1
3,279,030	+		Sama_2743	0.50	-0.1
3,279,030	+		Sama_2743	0.50	-0.5
3,279,030	+		Sama_2743	0.50	-1.7
3,279,031	-		Sama_2743	0.50	+1.3
3,279,031	-		Sama_2743	0.50	+0.2
3,279,031	-		Sama_2743	0.50	-0.5
3,279,031	-		Sama_2743	0.50	-0.2
3,279,031	-		Sama_2743	0.50	-1.2
3,279,061	+		Sama_2743	0.53	-0.3
3,279,061	+		Sama_2743	0.53	+0.6
3,279,061	+		Sama_2743	0.53	+0.2
3,279,061	+		Sama_2743	0.53	+1.1
3,279,061	+		Sama_2743	0.53	+0.0
3,279,061	+		Sama_2743	0.53	-1.9
3,279,062	-		Sama_2743	0.53	+0.1
3,279,062	-		Sama_2743	0.53	+0.6
3,279,062	-		Sama_2743	0.53	-0.9
3,279,062	-		Sama_2743	0.53	+0.9
3,279,062	-		Sama_2743	0.53	+0.1
3,279,062	-		Sama_2743	0.53	-0.3
3,279,063	+		Sama_2743	0.53	+1.3
3,279,063	+		Sama_2743	0.53	-3.3
3,279,063	+		Sama_2743	0.53	-2.3
3,279,063	+		Sama_2743	0.53	+1.8
3,279,063	+		Sama_2743	0.53	+0.7
3,279,063	+		Sama_2743	0.53	-0.3
3,279,063	+		Sama_2743	0.53	+1.9
3,279,063	+		Sama_2743	0.53	+0.2
3,279,063	+		Sama_2743	0.53	-0.6
3,279,063	+		Sama_2743	0.53	-0.2
3,279,063	+		Sama_2743	0.53	+0.6
3,279,063	+		Sama_2743	0.53	-0.6
3,279,064	-		Sama_2743	0.53	+0.1
3,279,064	-		Sama_2743	0.53	+0.8
3,279,118	-		Sama_2743	0.57	+0.5
3,279,118	-		Sama_2743	0.57	-0.3
3,279,130	+		Sama_2743	0.58	-0.9
3,279,187	+		Sama_2743	0.63	+0.0
3,279,188	-		Sama_2743	0.63	+0.2
3,279,202	+		Sama_2743	0.64	-0.4
3,279,202	+		Sama_2743	0.64	+0.2
3,279,202	+		Sama_2743	0.64	-1.5
3,279,202	+		Sama_2743	0.64	+1.6
3,279,203	-		Sama_2743	0.64	+0.5
3,279,203	-		Sama_2743	0.64	-1.4
3,279,203	-		Sama_2743	0.64	-0.5
3,279,203	-		Sama_2743	0.64	+1.5
3,279,203	-		Sama_2743	0.64	+0.7
3,279,203	-		Sama_2743	0.64	+2.8