Strain Fitness in Shewanella amazonensis SB2B around Sama_2215

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
2,676,827	+		Sama_2214	0.30	-2.7
2,676,864	-		Sama_2214	0.33	-3.3
2,676,864	-		Sama_2214	0.33	-0.9
2,676,864	-		Sama_2214	0.33	-1.8
2,676,880	-		Sama_2214	0.35	-3.0
2,676,949	+		Sama_2214	0.40	-0.4
2,676,999	+		Sama_2214	0.44	-0.7
2,677,022	-		Sama_2214	0.46	-2.2
2,677,025	+		Sama_2214	0.47	-2.6
2,677,025	+		Sama_2214	0.47	-0.1
2,677,026	-		Sama_2214	0.47	-2.6
2,677,026	-		Sama_2214	0.47	-3.5
2,677,026	-		Sama_2214	0.47	-1.8
2,677,026	-		Sama_2214	0.47	-1.6
2,677,136	+		Sama_2214	0.56	-3.0
2,677,136	+		Sama_2214	0.56	-1.9
2,677,136	+		Sama_2214	0.56	-1.2
2,677,136	+		Sama_2214	0.56	-3.0
2,677,137	-		Sama_2214	0.56	-2.1
2,677,137	-		Sama_2214	0.56	-0.6
2,677,247	-		Sama_2214	0.65	-2.7
2,677,260	+		Sama_2214	0.66	-1.9
2,677,277	+		Sama_2214	0.67	-2.8
2,677,277	+		Sama_2214	0.67	-1.9
2,677,343	+		Sama_2214	0.72	-2.2
2,677,343	+		Sama_2214	0.72	-1.7
2,677,344	-		Sama_2214	0.73	-0.3
2,677,344	-		Sama_2214	0.73	-1.1
2,677,344	-		Sama_2214	0.73	-1.5
2,677,344	-		Sama_2214	0.73	-2.7
2,677,344	-		Sama_2214	0.73	-2.9
2,677,344	-		Sama_2214	0.73	-1.9
2,677,346	+		Sama_2214	0.73	-2.2
2,677,365	-		Sama_2214	0.74	-2.1
2,677,365	-		Sama_2214	0.74	-1.9
2,677,438	+		Sama_2214	0.80	-1.9
2,677,529	-		Sama_2214	0.88	-2.9
2,677,596	+				-1.2
2,677,596	+				-2.4
2,677,597	-				-1.3
2,677,597	-				-0.9
2,677,597	-				-2.7
2,677,607	-				-0.9
2,677,607	-				-2.9
2,677,608	+				-1.8
2,677,608	+				-1.6
2,677,632	-				-3.7
2,677,632	-				-0.9
2,677,668	-				-2.5
2,677,695	-				-0.7
2,677,695	-				-3.0
2,677,731	+				-2.2
2,677,743	-				-1.9
2,677,750	-				-2.1
2,677,788	+				-0.3
2,677,788	+				-0.9
2,677,788	+				+1.5
2,677,788	+				-0.4
2,677,792	+				-0.9
2,677,792	+				-0.8
2,677,810	-				-3.3
2,677,810	-				+0.8
2,677,812	+				-2.5
2,677,812	+				-2.1
2,677,812	+				-1.2
2,677,812	+				-0.7
2,677,812	+				-3.8
2,677,812	+				-1.1
2,677,812	+				-1.4
2,677,813	-				+0.5
2,677,813	-				-1.2
2,677,813	-				-1.2
2,677,838	+				-1.8
2,677,857	+				-3.4
2,678,003	+		Sama_2215	0.23	-1.0
2,678,003	+		Sama_2215	0.23	-1.6
2,678,003	+		Sama_2215	0.23	-3.3
2,678,004	-		Sama_2215	0.23	-2.5
2,678,027	+		Sama_2215	0.25	-3.2
2,678,028	-		Sama_2215	0.25	-2.3
2,678,128	+		Sama_2215	0.37	-3.0
2,678,129	-		Sama_2215	0.37	-0.5
2,678,129	-		Sama_2215	0.37	-0.5
2,678,241	+		Sama_2215	0.50	-0.8
2,678,346	+		Sama_2215	0.61	-1.9
2,678,393	+		Sama_2215	0.67	-2.4
2,678,393	+		Sama_2215	0.67	-2.2
2,678,393	+		Sama_2215	0.67	-2.4
2,678,464	-		Sama_2215	0.75	-1.5
2,678,487	+		Sama_2215	0.77	-1.2
2,678,493	+		Sama_2215	0.78	-2.9
2,678,494	-		Sama_2215	0.78	-2.7
2,678,549	+		Sama_2215	0.84	-2.9
2,678,568	-		Sama_2215	0.87	-1.7
2,678,568	-		Sama_2215	0.87	-2.1
2,678,610	+				-2.7
2,678,611	-				-2.1
2,678,728	+				+0.7
2,678,756	+				-0.2
2,678,901	-		Sama_2216	0.38	+0.3
2,679,037	+		Sama_2216	0.67	-1.0
2,679,037	+		Sama_2216	0.67	+0.4
2,679,102	-		Sama_2216	0.81	-1.1
2,679,102	-		Sama_2216	0.81	-1.0
2,679,102	-		Sama_2216	0.81	-0.3
2,679,102	-		Sama_2216	0.81	-1.1
2,679,139	-		Sama_2216	0.89	-0.4
2,679,160	-				-0.3
2,679,160	-				+0.3
2,679,160	-				-0.7
2,679,160	-				-1.1
2,679,172	-				-0.7
2,679,172	-				+1.8
2,679,172	-				-2.1
2,679,172	-				+0.6
2,679,181	+				-1.8
2,679,194	-				-1.9
2,679,200	+				+0.6
2,679,220	-				-0.4
2,679,220	-				-0.8
2,679,261	+				+0.4
2,679,262	-				+0.2
2,679,262	-				-0.2
2,679,277	-				-0.6
2,679,277	-				+0.6
2,679,282	+				+0.6
2,679,282	+				+0.9
2,679,283	-				-0.3
2,679,284	+				+1.6
2,679,284	+				+1.1
2,679,284	+				-2.5
2,679,284	+				-2.3
2,679,285	-				+1.2
2,679,285	-				-0.5
2,679,285	-				-0.8
2,679,285	-				+0.0
2,679,285	-				+0.1
2,679,285	-				-1.4
2,679,296	+				-0.5
2,679,296	+				+0.6
2,679,297	-				+0.5
2,679,297	-				+0.1
2,679,302	-				-0.2
2,679,302	-				+0.1
2,679,302	-				+1.5
2,679,332	-				-0.2
2,679,332	-				+0.1
2,679,332	-				-1.2
2,679,342	+				-1.0
2,679,343	-				-1.3
2,679,343	-				+1.0
2,679,343	-				+0.1
2,679,343	-				+0.2
2,679,371	+				-0.7
2,679,372	-				-0.4
2,679,372	-				-0.7
2,679,372	-				-1.3
2,679,452	+		Sama_2217	0.12	-0.6
2,679,453	-		Sama_2217	0.12	-1.3
2,679,453	-		Sama_2217	0.12	-0.6
2,679,453	-		Sama_2217	0.12	-1.5
2,679,453	-		Sama_2217	0.12	-0.6
2,679,453	-		Sama_2217	0.12	-0.4
2,679,454	+		Sama_2217	0.12	+0.7
2,679,454	+		Sama_2217	0.12	-0.1
2,679,454	+		Sama_2217	0.12	-0.8
2,679,454	+		Sama_2217	0.12	-1.8
2,679,454	+		Sama_2217	0.12	+1.1
2,679,455	-		Sama_2217	0.12	+0.9
2,679,455	-		Sama_2217	0.12	+1.0
2,679,455	-		Sama_2217	0.12	-0.8
2,679,455	-		Sama_2217	0.12	-0.7
2,679,455	-		Sama_2217	0.12	-0.1
2,679,455	-		Sama_2217	0.12	+1.1
2,679,455	-		Sama_2217	0.12	+1.0
2,679,455	-		Sama_2217	0.12	+0.1
2,679,514	+		Sama_2217	0.15	+0.8
2,679,579	-		Sama_2217	0.18	-0.2
2,679,607	+		Sama_2217	0.19	+0.3
2,679,621	+		Sama_2217	0.20	+0.5
2,679,622	-		Sama_2217	0.20	+1.0
2,679,640	-		Sama_2217	0.21	-1.7
2,679,678	+		Sama_2217	0.23	-2.5
2,679,679	-		Sama_2217	0.23	-0.7
2,679,679	-		Sama_2217	0.23	+0.1
2,679,679	-		Sama_2217	0.23	-0.4
2,679,679	-		Sama_2217	0.23	+0.0
2,679,679	-		Sama_2217	0.23	+0.9
2,679,679	-		Sama_2217	0.23	+0.7
2,679,679	-		Sama_2217	0.23	-1.6
2,679,680	+		Sama_2217	0.23	-0.5
2,679,680	+		Sama_2217	0.23	-0.2
2,679,680	+		Sama_2217	0.23	+1.8
2,679,680	+		Sama_2217	0.23	-2.8
2,679,680	+		Sama_2217	0.23	-1.9
2,679,680	+		Sama_2217	0.23	+0.5
2,679,681	-		Sama_2217	0.23	-1.9
2,679,681	-		Sama_2217	0.23	-1.2
2,679,681	-		Sama_2217	0.23	-1.2
2,679,681	-		Sama_2217	0.23	-1.1
2,679,681	-		Sama_2217	0.23	+0.5
2,679,681	-		Sama_2217	0.23	+0.9