Strain Fitness in Shewanella amazonensis SB2B around Sama_2001

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
2,429,810	-		Sama_2000	0.25	+0.5
2,429,900	+		Sama_2000	0.36	+0.4
2,429,900	+		Sama_2000	0.36	+0.8
2,429,901	-		Sama_2000	0.36	+0.8
2,429,901	-		Sama_2000	0.36	-0.9
2,429,901	-		Sama_2000	0.36	-0.6
2,429,913	+		Sama_2000	0.37	-0.0
2,429,921	-		Sama_2000	0.38	-1.3
2,429,949	+		Sama_2000	0.41	-1.4
2,429,950	-		Sama_2000	0.41	-1.3
2,429,962	-		Sama_2000	0.43	+0.5
2,429,983	+		Sama_2000	0.45	-1.3
2,429,990	-		Sama_2000	0.46	-1.2
2,429,999	+		Sama_2000	0.47	-0.1
2,430,000	-		Sama_2000	0.47	+0.0
2,430,013	+		Sama_2000	0.49	+0.5
2,430,014	-		Sama_2000	0.49	-0.8
2,430,038	+		Sama_2000	0.52	-2.1
2,430,038	+		Sama_2000	0.52	+0.5
2,430,039	-		Sama_2000	0.52	+0.4
2,430,039	-		Sama_2000	0.52	-1.8
2,430,129	+		Sama_2000	0.62	+0.2
2,430,194	-		Sama_2000	0.70	+2.8
2,430,194	-		Sama_2000	0.70	-0.1
2,430,235	+		Sama_2000	0.75	-0.0
2,430,235	+		Sama_2000	0.75	+1.3
2,430,334	+		Sama_2000	0.86	-0.3
2,430,335	-		Sama_2000	0.86	+0.7
2,430,335	-		Sama_2000	0.86	+1.2
2,430,335	-		Sama_2000	0.86	-2.0
2,430,341	-		Sama_2000	0.87	+0.4
2,430,341	-		Sama_2000	0.87	-1.0
2,430,341	-		Sama_2000	0.87	-0.2
2,430,341	-		Sama_2000	0.87	+0.0
2,430,341	-		Sama_2000	0.87	-0.0
2,430,344	-		Sama_2000	0.87	+0.1
2,430,397	+				+0.4
2,430,398	-				-1.3
2,430,410	-				-0.3
2,430,410	-				-1.4
2,430,470	+				-0.1
2,430,471	-				-1.6
2,430,471	-				-1.0
2,430,492	+				-0.1
2,430,515	-				-0.8
2,430,536	-				-0.6
2,430,536	-				+0.9
2,430,620	+				-1.6
2,430,635	-				+0.0
2,430,638	+				+1.5
2,430,638	+				-0.8
2,430,705	+				-0.2
2,430,723	+				-1.3
2,430,776	+				+0.3
2,430,822	+				-1.0
2,430,822	+				-0.1
2,430,822	+				-0.6
2,430,822	+				-0.0
2,430,823	-				+1.5
2,430,853	+		Sama_2001	0.11	-0.6
2,430,853	+		Sama_2001	0.11	-1.5
2,430,853	+		Sama_2001	0.11	+1.4
2,430,853	+		Sama_2001	0.11	-0.1
2,430,854	-		Sama_2001	0.11	+0.0
2,430,854	-		Sama_2001	0.11	-1.0
2,430,854	-		Sama_2001	0.11	+0.7
2,430,854	-		Sama_2001	0.11	-1.2
2,430,854	-		Sama_2001	0.11	-1.1
2,430,854	-		Sama_2001	0.11	-0.8
2,430,865	+		Sama_2001	0.12	+0.6
2,430,865	+		Sama_2001	0.12	+0.3
2,430,866	-		Sama_2001	0.12	+1.0
2,430,866	-		Sama_2001	0.12	+0.2
2,430,871	+		Sama_2001	0.12	-0.8
2,430,871	+		Sama_2001	0.12	-1.4
2,430,871	+		Sama_2001	0.12	+0.4
2,430,871	+		Sama_2001	0.12	+0.4
2,430,871	+		Sama_2001	0.12	+1.4
2,430,871	+		Sama_2001	0.12	+1.4
2,430,872	-		Sama_2001	0.12	+2.3
2,430,872	-		Sama_2001	0.12	-1.1
2,430,872	-		Sama_2001	0.12	-0.7
2,430,872	-		Sama_2001	0.12	+1.6
2,430,872	-		Sama_2001	0.12	-1.8
2,430,872	-		Sama_2001	0.12	-1.6
2,430,872	-		Sama_2001	0.12	+0.4
2,430,872	-		Sama_2001	0.12	-0.2
2,430,872	-		Sama_2001	0.12	-1.3
2,431,127	+		Sama_2001	0.37	-0.2
2,431,127	+		Sama_2001	0.37	+0.5
2,431,178	+		Sama_2001	0.42	-1.3
2,431,178	+		Sama_2001	0.42	+1.1
2,431,178	+		Sama_2001	0.42	-1.0
2,431,183	-		Sama_2001	0.42	+0.8
2,431,217	-		Sama_2001	0.45	+0.0
2,431,258	-		Sama_2001	0.49	-0.1
2,431,428	+		Sama_2001	0.66	+0.9
2,431,428	+		Sama_2001	0.66	-0.0
2,431,428	+		Sama_2001	0.66	-1.5
2,431,429	-		Sama_2001	0.66	-0.4
2,431,429	-		Sama_2001	0.66	+1.2
2,431,429	-		Sama_2001	0.66	-0.1
2,431,429	-		Sama_2001	0.66	+1.3
2,431,432	+		Sama_2001	0.66	-0.2
2,431,433	-		Sama_2001	0.66	-1.0
2,431,433	-		Sama_2001	0.66	-0.7
2,431,433	-		Sama_2001	0.66	-0.5
2,431,433	-		Sama_2001	0.66	-0.4
2,431,433	-		Sama_2001	0.66	+2.9
2,431,433	-		Sama_2001	0.66	-1.0
2,431,514	-		Sama_2001	0.74	-0.9
2,431,514	-		Sama_2001	0.74	+0.2
2,431,736	-				+0.7
2,431,773	+				-0.6
2,431,774	-				+1.1
2,431,875	-		Sama_2002	0.16	+0.3
2,431,875	-		Sama_2002	0.16	+0.1
2,431,875	-		Sama_2002	0.16	+0.3
2,431,897	+		Sama_2002	0.19	-0.7
2,431,897	+		Sama_2002	0.19	+0.6
2,431,897	+		Sama_2002	0.19	-1.0
2,431,897	+		Sama_2002	0.19	+0.2
2,431,898	-		Sama_2002	0.20	-0.3
2,431,900	+		Sama_2002	0.20	+0.0
2,431,937	+		Sama_2002	0.26	-0.2
2,431,937	+		Sama_2002	0.26	-0.8
2,431,938	-		Sama_2002	0.26	+2.6
2,431,938	-		Sama_2002	0.26	+1.9
2,431,938	-		Sama_2002	0.26	-0.6
2,431,965	+		Sama_2002	0.30	+0.9
2,431,965	+		Sama_2002	0.30	+0.3
2,431,965	+		Sama_2002	0.30	+0.9
2,431,965	+		Sama_2002	0.30	-1.7
2,431,966	-		Sama_2002	0.30	+1.7
2,431,966	-		Sama_2002	0.30	-0.1
2,431,999	+		Sama_2002	0.35	-0.5
2,431,999	+		Sama_2002	0.35	+0.1
2,432,000	-		Sama_2002	0.35	-0.5
2,432,000	-		Sama_2002	0.35	-0.4
2,432,056	+		Sama_2002	0.44	-0.5
2,432,081	-		Sama_2002	0.48	-0.4
2,432,081	-		Sama_2002	0.48	+0.5
2,432,140	+		Sama_2002	0.57	-0.7
2,432,141	-		Sama_2002	0.57	+0.0
2,432,141	-		Sama_2002	0.57	-1.3
2,432,166	+		Sama_2002	0.61	-0.6
2,432,245	+		Sama_2002	0.73	+0.1
2,432,252	+		Sama_2002	0.74	+1.1
2,432,306	+		Sama_2002	0.83	+1.7
2,432,323	+		Sama_2002	0.85	+1.3
2,432,323	+		Sama_2002	0.85	+0.2
2,432,323	+		Sama_2002	0.85	+2.3
2,432,323	+		Sama_2002	0.85	+0.0
2,432,323	+		Sama_2002	0.85	-1.4
2,432,323	+		Sama_2002	0.85	-0.3
2,432,323	+		Sama_2002	0.85	+0.7
2,432,323	+		Sama_2002	0.85	-0.5
2,432,324	-		Sama_2002	0.86	-0.7
2,432,324	-		Sama_2002	0.86	-2.0
2,432,324	-		Sama_2002	0.86	-0.1
2,432,324	-		Sama_2002	0.86	-1.2
2,432,324	-		Sama_2002	0.86	+1.1
2,432,324	-		Sama_2002	0.86	+0.2
2,432,324	-		Sama_2002	0.86	+0.6
2,432,324	-		Sama_2002	0.86	+0.2
2,432,324	-		Sama_2002	0.86	+1.8
2,432,324	-		Sama_2002	0.86	+0.3
2,432,324	-		Sama_2002	0.86	-1.9
2,432,324	-		Sama_2002	0.86	+1.2
2,432,324	-		Sama_2002	0.86	+0.1
2,432,324	-		Sama_2002	0.86	+1.2
2,432,324	-		Sama_2002	0.86	+0.7
2,432,325	+		Sama_2002	0.86	-1.6
2,432,325	+		Sama_2002	0.86	-0.7
2,432,325	+		Sama_2002	0.86	-0.8
2,432,326	-		Sama_2002	0.86	+0.1
2,432,326	-		Sama_2002	0.86	-0.8
2,432,326	-		Sama_2002	0.86	+0.8
2,432,326	-		Sama_2002	0.86	-1.3
2,432,444	+				+0.4
2,432,588	+				+0.2
2,432,588	+				+0.1
2,432,629	+				-1.0
2,432,630	-		Sama_2003	0.10	+1.8
2,432,677	-		Sama_2003	0.12	+0.4
2,432,759	+		Sama_2003	0.16	+1.3
2,432,760	-		Sama_2003	0.16	+0.7