Strain Fitness in Shewanella amazonensis SB2B around Sama_1043

Experiment: L-Lysine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (N)
1,259,729	+	surE	Sama_1041	0.75	-1.0
1,259,729	+	surE	Sama_1041	0.75	-2.8
1,259,729	+	surE	Sama_1041	0.75	-2.7
1,259,729	+	surE	Sama_1041	0.75	+0.4
1,259,730	-	surE	Sama_1041	0.75	-2.4
1,259,730	-	surE	Sama_1041	0.75	-3.0
1,259,730	-	surE	Sama_1041	0.75	-0.2
1,259,833	+	surE	Sama_1041	0.89	-1.7
1,259,833	+	surE	Sama_1041	0.89	-1.1
1,259,833	+	surE	Sama_1041	0.89	-2.4
1,259,833	+	surE	Sama_1041	0.89	-0.8
1,259,833	+	surE	Sama_1041	0.89	-3.1
1,259,834	-	surE	Sama_1041	0.89	-1.4
1,259,834	-	surE	Sama_1041	0.89	-2.9
1,259,834	-	surE	Sama_1041	0.89	-0.7
1,259,834	-	surE	Sama_1041	0.89	-1.3
1,259,834	-	surE	Sama_1041	0.89	-3.0
1,259,834	-	surE	Sama_1041	0.89	-2.5
1,259,834	-	surE	Sama_1041	0.89	-1.5
1,259,884	-				-2.0
1,259,912	+				+0.4
1,259,961	+				+0.7
1,259,961	+				-0.5
1,259,961	+				-0.2
1,259,961	+				-2.4
1,259,961	+				-0.7
1,259,961	+				-1.9
1,259,962	-				-2.2
1,260,055	-		Sama_1042	0.22	-1.4
1,260,077	-		Sama_1042	0.26	-0.1
1,260,105	+		Sama_1042	0.30	+1.0
1,260,105	+		Sama_1042	0.30	-0.8
1,260,105	+		Sama_1042	0.30	+0.7
1,260,105	+		Sama_1042	0.30	-1.1
1,260,105	+		Sama_1042	0.30	-1.7
1,260,105	+		Sama_1042	0.30	+0.3
1,260,105	+		Sama_1042	0.30	-1.1
1,260,105	+		Sama_1042	0.30	+0.3
1,260,105	+		Sama_1042	0.30	+0.7
1,260,105	+		Sama_1042	0.30	+0.2
1,260,105	+		Sama_1042	0.30	-0.5
1,260,105	+		Sama_1042	0.30	-0.6
1,260,105	+		Sama_1042	0.30	-0.0
1,260,105	+		Sama_1042	0.30	-1.6
1,260,105	+		Sama_1042	0.30	+1.1
1,260,105	+		Sama_1042	0.30	-0.7
1,260,105	+		Sama_1042	0.30	-0.4
1,260,106	-		Sama_1042	0.30	+0.3
1,260,106	-		Sama_1042	0.30	-0.8
1,260,106	-		Sama_1042	0.30	+0.1
1,260,106	-		Sama_1042	0.30	+1.5
1,260,106	-		Sama_1042	0.30	-0.4
1,260,106	-		Sama_1042	0.30	-1.2
1,260,106	-		Sama_1042	0.30	-1.9
1,260,106	-		Sama_1042	0.30	-0.1
1,260,106	-		Sama_1042	0.30	-1.4
1,260,106	-		Sama_1042	0.30	-0.0
1,260,106	-		Sama_1042	0.30	-1.1
1,260,106	-		Sama_1042	0.30	-0.5
1,260,106	-		Sama_1042	0.30	-0.2
1,260,106	-		Sama_1042	0.30	+0.1
1,260,107	+		Sama_1042	0.31	+2.0
1,260,107	+		Sama_1042	0.31	+1.1
1,260,107	+		Sama_1042	0.31	-0.0
1,260,107	+		Sama_1042	0.31	-1.4
1,260,107	+		Sama_1042	0.31	-0.4
1,260,107	+		Sama_1042	0.31	+0.4
1,260,108	-		Sama_1042	0.31	+0.7
1,260,108	-		Sama_1042	0.31	-1.1
1,260,108	-		Sama_1042	0.31	+0.7
1,260,108	-		Sama_1042	0.31	-1.3
1,260,108	-		Sama_1042	0.31	-1.2
1,260,194	+		Sama_1042	0.44	+0.1
1,260,229	+		Sama_1042	0.50	-1.4
1,260,229	+		Sama_1042	0.50	-0.2
1,260,229	+		Sama_1042	0.50	+0.1
1,260,229	+		Sama_1042	0.50	+1.7
1,260,229	+		Sama_1042	0.50	+1.5
1,260,230	-		Sama_1042	0.50	+0.4
1,260,230	-		Sama_1042	0.50	+1.5
1,260,230	-		Sama_1042	0.50	-1.6
1,260,239	+		Sama_1042	0.51	+0.4
1,260,239	+		Sama_1042	0.51	+0.4
1,260,239	+		Sama_1042	0.51	-0.9
1,260,272	+		Sama_1042	0.56	+0.4
1,260,302	+		Sama_1042	0.61	+1.0
1,260,302	+		Sama_1042	0.61	-0.6
1,260,302	+		Sama_1042	0.61	+1.1
1,260,302	+		Sama_1042	0.61	-1.1
1,260,303	-		Sama_1042	0.61	-0.1
1,260,306	+		Sama_1042	0.62	+0.6
1,260,306	+		Sama_1042	0.62	-0.3
1,260,306	+		Sama_1042	0.62	+0.1
1,260,307	-		Sama_1042	0.62	-1.4
1,260,382	+		Sama_1042	0.74	-1.3
1,260,382	+		Sama_1042	0.74	-1.7
1,260,382	+		Sama_1042	0.74	-0.0
1,260,382	+		Sama_1042	0.74	+1.2
1,260,382	+		Sama_1042	0.74	+0.8
1,260,383	-		Sama_1042	0.74	-0.0
1,260,383	-		Sama_1042	0.74	+0.6
1,260,383	-		Sama_1042	0.74	-0.7
1,260,394	+		Sama_1042	0.76	+0.9
1,260,428	+		Sama_1042	0.81	-0.2
1,260,428	+		Sama_1042	0.81	+0.6
1,260,428	+		Sama_1042	0.81	-1.0
1,260,457	+		Sama_1042	0.86	-1.2
1,260,457	+		Sama_1042	0.86	+1.3
1,260,457	+		Sama_1042	0.86	+1.4
1,260,486	+				-0.4
1,260,487	-				-1.2
1,260,487	-				+1.4
1,260,546	+				+0.7
1,260,719	+		Sama_1043	0.16	+0.8
1,260,719	+		Sama_1043	0.16	+0.8
1,260,721	+		Sama_1043	0.16	+0.4
1,260,722	-		Sama_1043	0.16	-1.0
1,260,841	-		Sama_1043	0.30	+0.8
1,260,886	+		Sama_1043	0.35	-1.0
1,260,887	-		Sama_1043	0.35	+1.0
1,260,887	-		Sama_1043	0.35	+0.5
1,260,887	-		Sama_1043	0.35	-0.8
1,260,887	-		Sama_1043	0.35	+2.6
1,260,985	-		Sama_1043	0.46	-1.0
1,261,098	+		Sama_1043	0.58	+0.3
1,261,098	+		Sama_1043	0.58	+0.9
1,261,099	-		Sama_1043	0.58	+0.3
1,261,131	+		Sama_1043	0.62	+1.3
1,261,132	-		Sama_1043	0.62	+0.4
1,261,132	-		Sama_1043	0.62	+0.4
1,261,132	-		Sama_1043	0.62	+1.1
1,261,132	-		Sama_1043	0.62	-0.6
1,261,166	-		Sama_1043	0.66	+1.2
1,261,166	-		Sama_1043	0.66	-2.1
1,261,232	+		Sama_1043	0.73	-1.0
1,261,304	+		Sama_1043	0.81	-0.6
1,261,304	+		Sama_1043	0.81	-1.7
1,261,305	-		Sama_1043	0.82	+0.7
1,261,305	-		Sama_1043	0.82	-1.1
1,261,381	+				-0.4
1,261,431	+				+0.3
1,261,432	-				-2.1
1,261,438	+				-0.2
1,261,447	+				-1.2
1,261,447	+				-0.3
1,261,448	-				-0.2
1,261,451	+				+0.9
1,261,513	+				-0.3
1,261,548	+				+1.1
1,261,549	-				+0.9
1,261,551	+				-1.9
1,261,570	-				-0.0
1,261,724	-		Sama_1044	0.17	-1.9
1,261,724	-		Sama_1044	0.17	-0.9
1,261,774	+		Sama_1044	0.23	-0.1
1,261,816	-		Sama_1044	0.27	+0.9
1,261,826	+		Sama_1044	0.28	+0.1
1,261,826	+		Sama_1044	0.28	-0.2
1,261,826	+		Sama_1044	0.28	+1.0
1,261,826	+		Sama_1044	0.28	+0.1
1,261,826	+		Sama_1044	0.28	-0.2
1,261,899	+		Sama_1044	0.35	-1.9
1,261,975	+		Sama_1044	0.43	-1.1
1,261,975	+		Sama_1044	0.43	+0.3
1,261,975	+		Sama_1044	0.43	-0.6
1,261,975	+		Sama_1044	0.43	+0.1
1,261,976	-		Sama_1044	0.43	-0.3
1,262,074	+		Sama_1044	0.53	-2.1
1,262,075	-		Sama_1044	0.53	-0.6
1,262,104	-		Sama_1044	0.56	+0.1
1,262,175	+		Sama_1044	0.63	-1.5
1,262,175	+		Sama_1044	0.63	+0.4
1,262,176	-		Sama_1044	0.63	+1.1
1,262,236	-		Sama_1044	0.70	-0.2
1,262,252	+		Sama_1044	0.71	+0.5
1,262,252	+		Sama_1044	0.71	-0.2
1,262,252	+		Sama_1044	0.71	+0.6
1,262,252	+		Sama_1044	0.71	-0.5
1,262,253	-		Sama_1044	0.71	-0.2
1,262,253	-		Sama_1044	0.71	+0.7
1,262,253	-		Sama_1044	0.71	+1.9
1,262,255	+		Sama_1044	0.71	-1.1
1,262,256	-		Sama_1044	0.72	-0.9
1,262,284	+		Sama_1044	0.74	+0.4
1,262,284	+		Sama_1044	0.74	-0.8
1,262,284	+		Sama_1044	0.74	-0.2
1,262,284	+		Sama_1044	0.74	-1.5
1,262,284	+		Sama_1044	0.74	-1.2
1,262,284	+		Sama_1044	0.74	+0.2
1,262,285	-		Sama_1044	0.74	+0.7
1,262,285	-		Sama_1044	0.74	+0.2
1,262,285	-		Sama_1044	0.74	-1.1
1,262,285	-		Sama_1044	0.74	-0.4
1,262,285	-		Sama_1044	0.74	-0.9
1,262,286	+		Sama_1044	0.75	-0.8
1,262,286	+		Sama_1044	0.75	-0.5
1,262,286	+		Sama_1044	0.75	-2.4
1,262,286	+		Sama_1044	0.75	+0.0
1,262,286	+		Sama_1044	0.75	+1.0
1,262,286	+		Sama_1044	0.75	-0.3
1,262,286	+		Sama_1044	0.75	+0.7
1,262,286	+		Sama_1044	0.75	+0.9
1,262,286	+		Sama_1044	0.75	+1.5
1,262,286	+		Sama_1044	0.75	-1.6
1,262,287	-		Sama_1044	0.75	+2.8
1,262,287	-		Sama_1044	0.75	+0.4
1,262,287	-		Sama_1044	0.75	-0.9
1,262,287	-		Sama_1044	0.75	-0.3
1,262,287	-		Sama_1044	0.75	-0.5
1,262,287	-		Sama_1044	0.75	-1.3
1,262,291	+		Sama_1044	0.75	+1.6
1,262,291	+		Sama_1044	0.75	-0.2
1,262,291	+		Sama_1044	0.75	-0.6
1,262,291	+		Sama_1044	0.75	-1.5
1,262,292	-		Sama_1044	0.75	-0.6
1,262,292	-		Sama_1044	0.75	-0.0
1,262,292	-		Sama_1044	0.75	+1.4
1,262,292	-		Sama_1044	0.75	-2.5
1,262,306	+		Sama_1044	0.77	-2.0
1,262,306	+		Sama_1044	0.77	-1.7
1,262,306	+		Sama_1044	0.77	+0.1
1,262,307	-		Sama_1044	0.77	-0.6
1,262,307	-		Sama_1044	0.77	-0.9
1,262,307	-		Sama_1044	0.77	+1.6
1,262,307	-		Sama_1044	0.77	-0.3
1,262,307	-		Sama_1044	0.77	-1.5
1,262,307	-		Sama_1044	0.77	+0.7
1,262,310	+		Sama_1044	0.77	+2.0
1,262,310	+		Sama_1044	0.77	+1.4
1,262,310	+		Sama_1044	0.77	-1.3
1,262,311	-		Sama_1044	0.77	-0.4
1,262,343	+		Sama_1044	0.80	+0.4
1,262,343	+		Sama_1044	0.80	-0.9
1,262,389	+		Sama_1044	0.85	+1.0
1,262,390	-		Sama_1044	0.85	-1.2
1,262,447	+				-0.2
1,262,456	+				+0.1
1,262,456	+				-2.2
1,262,456	+				-0.8
1,262,462	+				-0.9
1,262,462	+				-1.6
1,262,462	+				-2.0
1,262,463	-				+1.0