Strain Fitness in Shewanella amazonensis SB2B around Sama_0503

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0502 and Sama_0503 are separated by 146 nucleotidesSama_0503 and Sama_0504 are separated by 137 nucleotides Sama_0502: Sama_0502 - alkaline phosphatase (RefSeq), at 615,538 to 617,202 _0502 Sama_0503: Sama_0503 - hypothetical protein (RefSeq), at 617,349 to 617,810 _0503 Sama_0504: Sama_0504 - hypothetical protein (RefSeq), at 617,948 to 619,003 _0504 Position (kb) 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 616.370 kb on + strand, within Sama_0502at 616.371 kb on - strand, within Sama_0502at 616.371 kb on - strand, within Sama_0502at 616.467 kb on - strand, within Sama_0502at 616.512 kb on + strand, within Sama_0502at 616.512 kb on + strand, within Sama_0502at 616.513 kb on - strand, within Sama_0502at 616.529 kb on - strand, within Sama_0502at 616.602 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.679 kb on + strand, within Sama_0502at 616.680 kb on - strand, within Sama_0502at 616.680 kb on - strand, within Sama_0502at 616.680 kb on - strand, within Sama_0502at 616.798 kb on + strand, within Sama_0502at 616.798 kb on + strand, within Sama_0502at 616.798 kb on + strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.799 kb on - strand, within Sama_0502at 616.802 kb on + strand, within Sama_0502at 616.802 kb on + strand, within Sama_0502at 616.802 kb on + strand, within Sama_0502at 616.802 kb on + strand, within Sama_0502at 616.802 kb on + strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.803 kb on - strand, within Sama_0502at 616.976 kb on + strand, within Sama_0502at 616.976 kb on + strand, within Sama_0502at 616.977 kb on - strand, within Sama_0502at 616.977 kb on - strand, within Sama_0502at 616.977 kb on - strand, within Sama_0502at 616.977 kb on - strand, within Sama_0502at 617.003 kb on + strand, within Sama_0502at 617.003 kb on + strand, within Sama_0502at 617.004 kb on - strand, within Sama_0502at 617.015 kb on - strand, within Sama_0502at 617.015 kb on - strand, within Sama_0502at 617.037 kb on + strandat 617.037 kb on + strandat 617.037 kb on + strandat 617.038 kb on - strandat 617.038 kb on - strandat 617.038 kb on - strandat 617.038 kb on - strandat 617.176 kb on + strandat 617.177 kb on - strandat 617.193 kb on + strandat 617.193 kb on + strandat 617.193 kb on + strandat 617.193 kb on + strandat 617.194 kb on - strandat 617.194 kb on - strandat 617.224 kb on + strandat 617.225 kb on - strandat 617.225 kb on - strandat 617.225 kb on - strandat 617.225 kb on - strandat 617.225 kb on - strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.227 kb on + strandat 617.228 kb on - strandat 617.228 kb on - strandat 617.231 kb on + strandat 617.231 kb on + strandat 617.231 kb on + strandat 617.231 kb on + strandat 617.231 kb on + strandat 617.231 kb on + strandat 617.231 kb on + strandat 617.232 kb on - strandat 617.232 kb on - strandat 617.244 kb on - strandat 617.307 kb on - strandat 617.310 kb on + strandat 617.386 kb on - strandat 617.411 kb on + strand, within Sama_0503at 617.411 kb on + strand, within Sama_0503at 617.411 kb on + strand, within Sama_0503at 617.411 kb on + strand, within Sama_0503at 617.411 kb on + strand, within Sama_0503at 617.411 kb on + strand, within Sama_0503at 617.411 kb on + strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.412 kb on - strand, within Sama_0503at 617.491 kb on + strand, within Sama_0503at 617.498 kb on - strand, within Sama_0503at 617.498 kb on - strand, within Sama_0503at 617.498 kb on - strand, within Sama_0503at 617.561 kb on - strand, within Sama_0503at 617.561 kb on - strand, within Sama_0503at 617.605 kb on + strand, within Sama_0503at 617.605 kb on + strand, within Sama_0503at 617.653 kb on + strand, within Sama_0503at 617.653 kb on + strand, within Sama_0503at 617.664 kb on + strand, within Sama_0503at 617.665 kb on - strand, within Sama_0503at 617.777 kb on - strandat 617.810 kb on + strandat 617.810 kb on + strandat 617.811 kb on - strandat 617.811 kb on - strandat 617.811 kb on - strandat 617.811 kb on - strandat 617.811 kb on - strandat 617.811 kb on - strandat 617.811 kb on - strandat 617.827 kb on + strandat 617.863 kb on + strandat 617.864 kb on - strandat 617.865 kb on + strandat 617.866 kb on - strandat 617.893 kb on + strandat 617.912 kb on + strandat 617.912 kb on + strandat 617.918 kb on + strandat 617.918 kb on + strandat 617.919 kb on - strandat 617.919 kb on - strandat 617.919 kb on - strandat 617.926 kb on + strandat 617.926 kb on + strandat 617.942 kb on - strandat 617.965 kb on - strandat 618.082 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.086 kb on + strand, within Sama_0504at 618.087 kb on - strand, within Sama_0504at 618.087 kb on - strand, within Sama_0504at 618.087 kb on - strand, within Sama_0504at 618.106 kb on + strand, within Sama_0504at 618.198 kb on - strand, within Sama_0504at 618.218 kb on + strand, within Sama_0504at 618.218 kb on + strand, within Sama_0504at 618.219 kb on - strand, within Sama_0504at 618.219 kb on - strand, within Sama_0504at 618.220 kb on + strand, within Sama_0504at 618.221 kb on - strand, within Sama_0504at 618.233 kb on + strand, within Sama_0504at 618.234 kb on - strand, within Sama_0504at 618.280 kb on + strand, within Sama_0504at 618.280 kb on + strand, within Sama_0504at 618.280 kb on + strand, within Sama_0504at 618.280 kb on + strand, within Sama_0504at 618.280 kb on + strand, within Sama_0504at 618.281 kb on - strand, within Sama_0504at 618.281 kb on - strand, within Sama_0504at 618.281 kb on - strand, within Sama_0504at 618.375 kb on + strand, within Sama_0504at 618.376 kb on - strand, within Sama_0504at 618.376 kb on - strand, within Sama_0504at 618.376 kb on - strand, within Sama_0504at 618.528 kb on + strand, within Sama_0504at 618.650 kb on + strand, within Sama_0504at 618.650 kb on + strand, within Sama_0504at 618.650 kb on + strand, within Sama_0504at 618.650 kb on + strand, within Sama_0504at 618.650 kb on + strand, within Sama_0504at 618.651 kb on - strand, within Sama_0504at 618.651 kb on - strand, within Sama_0504at 618.671 kb on + strand, within Sama_0504at 618.716 kb on + strand, within Sama_0504at 618.717 kb on - strand, within Sama_0504at 618.757 kb on + strand, within Sama_0504at 618.758 kb on - strand, within Sama_0504at 618.791 kb on + strand, within Sama_0504at 618.791 kb on + strand, within Sama_0504at 618.791 kb on + strand, within Sama_0504at 618.791 kb on + strand, within Sama_0504at 618.792 kb on - strand, within Sama_0504at 618.792 kb on - strand, within Sama_0504at 618.792 kb on - strand, within Sama_0504at 618.796 kb on + strand, within Sama_0504at 618.796 kb on + strand, within Sama_0504at 618.796 kb on + strand, within Sama_0504at 618.796 kb on + strand, within Sama_0504at 618.797 kb on - strand, within Sama_0504at 618.797 kb on - strand, within Sama_0504

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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616,370 + Sama_0502 0.50 +1.3
616,371 - Sama_0502 0.50 +1.9
616,371 - Sama_0502 0.50 +0.7
616,467 - Sama_0502 0.56 -0.4
616,512 + Sama_0502 0.58 -0.7
616,512 + Sama_0502 0.58 -0.8
616,513 - Sama_0502 0.59 +0.5
616,529 - Sama_0502 0.60 -1.1
616,602 + Sama_0502 0.64 -0.8
616,679 + Sama_0502 0.69 +1.1
616,679 + Sama_0502 0.69 +0.3
616,679 + Sama_0502 0.69 -1.0
616,679 + Sama_0502 0.69 -1.5
616,679 + Sama_0502 0.69 +0.5
616,679 + Sama_0502 0.69 -0.9
616,679 + Sama_0502 0.69 -1.5
616,680 - Sama_0502 0.69 +1.8
616,680 - Sama_0502 0.69 +0.8
616,680 - Sama_0502 0.69 +0.2
616,798 + Sama_0502 0.76 +0.3
616,798 + Sama_0502 0.76 +0.1
616,798 + Sama_0502 0.76 -0.7
616,799 - Sama_0502 0.76 +0.3
616,799 - Sama_0502 0.76 -1.2
616,799 - Sama_0502 0.76 +1.1
616,799 - Sama_0502 0.76 +0.3
616,799 - Sama_0502 0.76 -0.4
616,799 - Sama_0502 0.76 -0.5
616,799 - Sama_0502 0.76 -2.1
616,799 - Sama_0502 0.76 +0.2
616,802 + Sama_0502 0.76 -0.2
616,802 + Sama_0502 0.76 +0.3
616,802 + Sama_0502 0.76 +0.2
616,802 + Sama_0502 0.76 -0.0
616,802 + Sama_0502 0.76 +0.2
616,803 - Sama_0502 0.76 -0.2
616,803 - Sama_0502 0.76 -0.9
616,803 - Sama_0502 0.76 +0.9
616,803 - Sama_0502 0.76 -1.0
616,803 - Sama_0502 0.76 -0.3
616,803 - Sama_0502 0.76 -1.8
616,803 - Sama_0502 0.76 +0.4
616,803 - Sama_0502 0.76 -0.5
616,803 - Sama_0502 0.76 -0.6
616,803 - Sama_0502 0.76 +0.5
616,976 + Sama_0502 0.86 -0.0
616,976 + Sama_0502 0.86 +1.3
616,977 - Sama_0502 0.86 +1.7
616,977 - Sama_0502 0.86 +0.6
616,977 - Sama_0502 0.86 +0.5
616,977 - Sama_0502 0.86 -0.0
617,003 + Sama_0502 0.88 -0.9
617,003 + Sama_0502 0.88 +1.2
617,004 - Sama_0502 0.88 +3.2
617,015 - Sama_0502 0.89 +1.8
617,015 - Sama_0502 0.89 -1.4
617,037 + -0.6
617,037 + +0.1
617,037 + -1.0
617,038 - -0.9
617,038 - -1.5
617,038 - -0.2
617,038 - +0.3
617,176 + -0.9
617,177 - -0.5
617,193 + -0.0
617,193 + +0.1
617,193 + -0.2
617,193 + +1.1
617,194 - -0.1
617,194 - -0.2
617,224 + -0.3
617,225 - +0.8
617,225 - -0.9
617,225 - +1.2
617,225 - +0.7
617,225 - +1.4
617,227 + -2.6
617,227 + -0.7
617,227 + +0.7
617,227 + +0.6
617,227 + +1.0
617,227 + -2.5
617,227 + -0.5
617,227 + -2.5
617,227 + +0.1
617,227 + -0.4
617,228 - -0.4
617,228 - -0.6
617,231 + +0.0
617,231 + -0.9
617,231 + -0.6
617,231 + -0.3
617,231 + -0.2
617,231 + +0.1
617,231 + +0.6
617,232 - -1.2
617,232 - +0.7
617,244 - -0.0
617,307 - -0.7
617,310 + -0.2
617,386 - +1.8
617,411 + Sama_0503 0.13 +0.3
617,411 + Sama_0503 0.13 -2.6
617,411 + Sama_0503 0.13 +0.6
617,411 + Sama_0503 0.13 -0.1
617,411 + Sama_0503 0.13 -0.2
617,411 + Sama_0503 0.13 -0.7
617,411 + Sama_0503 0.13 -0.1
617,412 - Sama_0503 0.14 +2.3
617,412 - Sama_0503 0.14 -1.3
617,412 - Sama_0503 0.14 -0.3
617,412 - Sama_0503 0.14 -2.3
617,412 - Sama_0503 0.14 +0.4
617,412 - Sama_0503 0.14 +1.4
617,412 - Sama_0503 0.14 +0.6
617,491 + Sama_0503 0.31 -0.9
617,498 - Sama_0503 0.32 +0.7
617,498 - Sama_0503 0.32 -0.4
617,498 - Sama_0503 0.32 -0.7
617,561 - Sama_0503 0.46 -0.4
617,561 - Sama_0503 0.46 -0.8
617,605 + Sama_0503 0.55 -0.6
617,605 + Sama_0503 0.55 -0.4
617,653 + Sama_0503 0.66 +3.0
617,653 + Sama_0503 0.66 -0.4
617,664 + Sama_0503 0.68 +2.4
617,665 - Sama_0503 0.68 +0.2
617,777 - -0.7
617,810 + -0.0
617,810 + -1.5
617,811 - -0.3
617,811 - -0.9
617,811 - -0.6
617,811 - +0.8
617,811 - -0.1
617,811 - +1.6
617,811 - +0.6
617,827 + +3.4
617,863 + +0.9
617,864 - +0.3
617,865 + +0.9
617,866 - +0.0
617,893 + -0.7
617,912 + -1.3
617,912 + -0.8
617,918 + -0.2
617,918 + +1.6
617,919 - -1.7
617,919 - -0.7
617,919 - -1.0
617,926 + +0.4
617,926 + -0.2
617,942 - +1.3
617,965 - +0.6
618,082 + Sama_0504 0.13 -1.4
618,086 + Sama_0504 0.13 +0.2
618,086 + Sama_0504 0.13 -0.0
618,086 + Sama_0504 0.13 -0.4
618,086 + Sama_0504 0.13 +0.6
618,086 + Sama_0504 0.13 +0.1
618,086 + Sama_0504 0.13 -3.1
618,086 + Sama_0504 0.13 +1.1
618,087 - Sama_0504 0.13 -1.1
618,087 - Sama_0504 0.13 +0.9
618,087 - Sama_0504 0.13 +1.3
618,106 + Sama_0504 0.15 +1.6
618,198 - Sama_0504 0.24 -0.5
618,218 + Sama_0504 0.26 +0.6
618,218 + Sama_0504 0.26 +0.1
618,219 - Sama_0504 0.26 -0.9
618,219 - Sama_0504 0.26 -2.4
618,220 + Sama_0504 0.26 +0.1
618,221 - Sama_0504 0.26 +1.0
618,233 + Sama_0504 0.27 -0.2
618,234 - Sama_0504 0.27 -0.2
618,280 + Sama_0504 0.31 -0.8
618,280 + Sama_0504 0.31 -1.8
618,280 + Sama_0504 0.31 -0.2
618,280 + Sama_0504 0.31 -1.9
618,280 + Sama_0504 0.31 +0.6
618,281 - Sama_0504 0.32 +1.0
618,281 - Sama_0504 0.32 -2.0
618,281 - Sama_0504 0.32 -0.6
618,375 + Sama_0504 0.40 -1.7
618,376 - Sama_0504 0.41 +1.5
618,376 - Sama_0504 0.41 +0.2
618,376 - Sama_0504 0.41 -0.2
618,528 + Sama_0504 0.55 +0.5
618,650 + Sama_0504 0.66 +0.9
618,650 + Sama_0504 0.66 +1.4
618,650 + Sama_0504 0.66 -0.3
618,650 + Sama_0504 0.66 -0.4
618,650 + Sama_0504 0.66 -0.9
618,651 - Sama_0504 0.67 -0.5
618,651 - Sama_0504 0.67 -0.1
618,671 + Sama_0504 0.68 -1.0
618,716 + Sama_0504 0.73 -0.3
618,717 - Sama_0504 0.73 +0.3
618,757 + Sama_0504 0.77 +0.9
618,758 - Sama_0504 0.77 -1.8
618,791 + Sama_0504 0.80 -1.3
618,791 + Sama_0504 0.80 -0.7
618,791 + Sama_0504 0.80 -0.5
618,791 + Sama_0504 0.80 +1.0
618,792 - Sama_0504 0.80 -1.1
618,792 - Sama_0504 0.80 -1.9
618,792 - Sama_0504 0.80 -0.0
618,796 + Sama_0504 0.80 -1.3
618,796 + Sama_0504 0.80 +2.6
618,796 + Sama_0504 0.80 -1.4
618,796 + Sama_0504 0.80 -0.3
618,797 - Sama_0504 0.80 -1.4
618,797 - Sama_0504 0.80 -0.5

Or see this region's nucleotide sequence