Strain Fitness in Shewanella amazonensis SB2B around Sama_0195

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0193 and Sama_0194 are separated by 122 nucleotidesSama_0194 and Sama_0195 are separated by 8 nucleotidesSama_0195 and Sama_R0004 are separated by 558 nucleotides Sama_0193: Sama_0193 - tRNA (uracil-5-)-methyltransferase (RefSeq), at 221,311 to 222,408 _0193 Sama_0194: Sama_0194 - glutamate racemase (RefSeq), at 222,531 to 223,331 _0194 Sama_0195: Sama_0195 - RNA-binding protein (RefSeq), at 223,340 to 223,795 _0195 Sama_R0004: Sama_R0004 - 16S ribosomal RNA (RefSeq), at 224,354 to 225,890 _R0004 Position (kb) 223 224Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 222.377 kb on + strandat 222.377 kb on + strandat 222.378 kb on - strandat 222.378 kb on - strandat 222.378 kb on - strandat 222.378 kb on - strandat 222.427 kb on + strandat 222.447 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.463 kb on + strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.464 kb on - strandat 222.490 kb on + strandat 222.490 kb on + strandat 222.495 kb on + strandat 222.495 kb on + strandat 222.495 kb on + strandat 223.312 kb on + strandat 223.313 kb on - strandat 223.313 kb on - strandat 223.313 kb on - strandat 223.322 kb on + strandat 223.322 kb on + strandat 223.323 kb on - strandat 223.323 kb on - strandat 223.323 kb on - strandat 223.389 kb on - strand, within Sama_0195at 223.389 kb on - strand, within Sama_0195at 223.394 kb on + strand, within Sama_0195at 223.394 kb on + strand, within Sama_0195at 223.394 kb on + strand, within Sama_0195at 223.394 kb on + strand, within Sama_0195at 223.395 kb on - strand, within Sama_0195at 223.395 kb on - strand, within Sama_0195at 223.395 kb on - strand, within Sama_0195at 223.416 kb on + strand, within Sama_0195at 223.416 kb on + strand, within Sama_0195at 223.416 kb on + strand, within Sama_0195at 223.417 kb on - strand, within Sama_0195at 223.417 kb on - strand, within Sama_0195at 223.525 kb on + strand, within Sama_0195at 223.537 kb on - strand, within Sama_0195at 223.556 kb on + strand, within Sama_0195at 223.556 kb on + strand, within Sama_0195at 223.556 kb on + strand, within Sama_0195at 223.556 kb on + strand, within Sama_0195at 223.556 kb on + strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.557 kb on - strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.596 kb on + strand, within Sama_0195at 223.597 kb on - strand, within Sama_0195at 223.597 kb on - strand, within Sama_0195at 223.597 kb on - strand, within Sama_0195at 223.597 kb on - strand, within Sama_0195at 223.597 kb on - strand, within Sama_0195at 223.618 kb on + strand, within Sama_0195at 223.618 kb on + strand, within Sama_0195at 223.618 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.620 kb on + strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.621 kb on - strand, within Sama_0195at 223.672 kb on + strand, within Sama_0195at 223.672 kb on + strand, within Sama_0195at 223.673 kb on - strand, within Sama_0195at 223.673 kb on - strand, within Sama_0195at 223.673 kb on - strand, within Sama_0195at 223.676 kb on + strand, within Sama_0195at 223.676 kb on + strand, within Sama_0195at 223.676 kb on + strand, within Sama_0195at 223.676 kb on + strand, within Sama_0195at 223.677 kb on - strand, within Sama_0195at 223.677 kb on - strand, within Sama_0195at 223.694 kb on + strand, within Sama_0195at 223.694 kb on + strand, within Sama_0195at 223.694 kb on + strand, within Sama_0195at 223.694 kb on + strand, within Sama_0195at 223.695 kb on - strand, within Sama_0195at 223.695 kb on - strand, within Sama_0195at 223.695 kb on - strand, within Sama_0195at 223.699 kb on + strand, within Sama_0195at 223.700 kb on - strand, within Sama_0195at 223.710 kb on + strand, within Sama_0195at 223.710 kb on + strand, within Sama_0195at 223.710 kb on + strand, within Sama_0195at 223.710 kb on + strand, within Sama_0195at 223.727 kb on + strand, within Sama_0195at 223.727 kb on + strand, within Sama_0195at 223.728 kb on - strand, within Sama_0195at 223.728 kb on - strand, within Sama_0195at 223.777 kb on + strandat 223.778 kb on - strandat 223.820 kb on - strandat 223.831 kb on - strandat 223.842 kb on - strandat 223.851 kb on + strandat 223.851 kb on + strandat 223.852 kb on - strandat 223.853 kb on + strandat 223.853 kb on + strandat 223.853 kb on + strandat 223.853 kb on + strandat 223.854 kb on - strandat 223.854 kb on - strandat 223.854 kb on - strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.855 kb on + strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.856 kb on - strandat 223.859 kb on - strandat 223.876 kb on + strandat 223.877 kb on - strandat 223.934 kb on - strandat 224.005 kb on - strandat 224.061 kb on + strandat 224.062 kb on - strandat 224.062 kb on - strandat 224.063 kb on + strandat 224.063 kb on + strandat 224.063 kb on + strandat 224.063 kb on + strandat 224.064 kb on - strandat 224.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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222,377 + -2.0
222,377 + -0.7
222,378 - -0.2
222,378 - -1.0
222,378 - -2.4
222,378 - -0.7
222,427 + +0.7
222,447 + -2.7
222,463 + -0.1
222,463 + -0.6
222,463 + -0.5
222,463 + -1.1
222,463 + -0.8
222,463 + -1.9
222,463 + -1.4
222,463 + +2.4
222,463 + -0.3
222,464 - -0.9
222,464 - -2.5
222,464 - +0.7
222,464 - -1.9
222,464 - +0.1
222,464 - -1.1
222,464 - -0.8
222,464 - +1.7
222,490 + +4.4
222,490 + -0.2
222,495 + -0.8
222,495 + -0.4
222,495 + -1.0
223,312 + -1.6
223,313 - +1.8
223,313 - -1.7
223,313 - +0.0
223,322 + -0.9
223,322 + -1.8
223,323 - -0.6
223,323 - -0.3
223,323 - -1.6
223,389 - Sama_0195 0.11 +0.3
223,389 - Sama_0195 0.11 -0.8
223,394 + Sama_0195 0.12 -0.3
223,394 + Sama_0195 0.12 -1.3
223,394 + Sama_0195 0.12 +0.0
223,394 + Sama_0195 0.12 -1.6
223,395 - Sama_0195 0.12 -0.3
223,395 - Sama_0195 0.12 -1.5
223,395 - Sama_0195 0.12 +1.5
223,416 + Sama_0195 0.17 -0.2
223,416 + Sama_0195 0.17 -0.4
223,416 + Sama_0195 0.17 +1.4
223,417 - Sama_0195 0.17 -1.2
223,417 - Sama_0195 0.17 -0.4
223,525 + Sama_0195 0.41 -0.9
223,537 - Sama_0195 0.43 -0.3
223,556 + Sama_0195 0.47 +0.6
223,556 + Sama_0195 0.47 -0.2
223,556 + Sama_0195 0.47 +0.4
223,556 + Sama_0195 0.47 +0.8
223,556 + Sama_0195 0.47 -0.9
223,557 - Sama_0195 0.48 -0.9
223,557 - Sama_0195 0.48 +1.6
223,557 - Sama_0195 0.48 +0.3
223,557 - Sama_0195 0.48 -0.7
223,557 - Sama_0195 0.48 -0.2
223,557 - Sama_0195 0.48 +0.8
223,557 - Sama_0195 0.48 +1.3
223,596 + Sama_0195 0.56 +0.0
223,596 + Sama_0195 0.56 +0.8
223,596 + Sama_0195 0.56 -1.1
223,596 + Sama_0195 0.56 +0.1
223,596 + Sama_0195 0.56 -0.6
223,596 + Sama_0195 0.56 +0.1
223,596 + Sama_0195 0.56 +0.6
223,597 - Sama_0195 0.56 -1.1
223,597 - Sama_0195 0.56 +1.4
223,597 - Sama_0195 0.56 +0.2
223,597 - Sama_0195 0.56 -1.7
223,597 - Sama_0195 0.56 -0.6
223,618 + Sama_0195 0.61 +0.7
223,618 + Sama_0195 0.61 -2.1
223,618 + Sama_0195 0.61 +1.0
223,620 + Sama_0195 0.61 -1.5
223,620 + Sama_0195 0.61 -0.5
223,620 + Sama_0195 0.61 +0.7
223,620 + Sama_0195 0.61 -1.4
223,620 + Sama_0195 0.61 -2.2
223,620 + Sama_0195 0.61 -1.1
223,620 + Sama_0195 0.61 -0.6
223,621 - Sama_0195 0.62 -0.4
223,621 - Sama_0195 0.62 -1.8
223,621 - Sama_0195 0.62 -1.2
223,621 - Sama_0195 0.62 -1.0
223,621 - Sama_0195 0.62 -1.2
223,621 - Sama_0195 0.62 +1.1
223,621 - Sama_0195 0.62 -0.5
223,621 - Sama_0195 0.62 +0.2
223,672 + Sama_0195 0.73 +0.1
223,672 + Sama_0195 0.73 +0.2
223,673 - Sama_0195 0.73 -0.4
223,673 - Sama_0195 0.73 -0.6
223,673 - Sama_0195 0.73 -2.5
223,676 + Sama_0195 0.74 -0.5
223,676 + Sama_0195 0.74 -1.4
223,676 + Sama_0195 0.74 -0.5
223,676 + Sama_0195 0.74 -1.0
223,677 - Sama_0195 0.74 -0.4
223,677 - Sama_0195 0.74 -0.1
223,694 + Sama_0195 0.78 -1.4
223,694 + Sama_0195 0.78 -1.0
223,694 + Sama_0195 0.78 -1.0
223,694 + Sama_0195 0.78 -2.2
223,695 - Sama_0195 0.78 +0.3
223,695 - Sama_0195 0.78 -1.6
223,695 - Sama_0195 0.78 -1.0
223,699 + Sama_0195 0.79 -0.2
223,700 - Sama_0195 0.79 -0.5
223,710 + Sama_0195 0.81 +2.9
223,710 + Sama_0195 0.81 -0.6
223,710 + Sama_0195 0.81 +0.1
223,710 + Sama_0195 0.81 -1.9
223,727 + Sama_0195 0.85 -0.4
223,727 + Sama_0195 0.85 -0.6
223,728 - Sama_0195 0.85 -2.0
223,728 - Sama_0195 0.85 -0.3
223,777 + +2.9
223,778 - -0.1
223,820 - -0.4
223,831 - -2.2
223,842 - -0.9
223,851 + -1.9
223,851 + -1.2
223,852 - +1.3
223,853 + +0.0
223,853 + +0.9
223,853 + -1.0
223,853 + +0.4
223,854 - +0.3
223,854 - +0.2
223,854 - -0.4
223,855 + -1.9
223,855 + -0.4
223,855 + -0.3
223,855 + -0.4
223,855 + -1.2
223,855 + -0.1
223,855 + +1.6
223,855 + +1.3
223,856 - -1.4
223,856 - +0.9
223,856 - +0.2
223,856 - +1.1
223,856 - -0.2
223,856 - -0.2
223,856 - +0.9
223,856 - -1.4
223,856 - +1.2
223,856 - -0.1
223,856 - -1.0
223,859 - -0.9
223,876 + -0.1
223,877 - -0.9
223,934 - -0.1
224,005 - +0.0
224,061 + +0.7
224,062 - -0.1
224,062 - +0.1
224,063 + -2.1
224,063 + -0.9
224,063 + -1.9
224,063 + -0.4
224,064 - +0.3
224,064 - -0.7

Or see this region's nucleotide sequence