Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3872

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
87,360	-		Dshi_3871	0.74	-0.7
87,361	-		Dshi_3871	0.74	-0.1
87,379	+		Dshi_3871	0.75	-1.5
87,379	+		Dshi_3871	0.75	-0.1
87,387	-		Dshi_3871	0.75	-0.2
87,387	-		Dshi_3871	0.75	+1.5
87,387	-		Dshi_3871	0.75	+0.3
87,394	-		Dshi_3871	0.75	+0.1
87,444	-		Dshi_3871	0.77	+0.1
87,461	+		Dshi_3871	0.77	-1.7
87,483	+		Dshi_3871	0.78	+0.1
87,483	+		Dshi_3871	0.78	-0.0
87,486	-		Dshi_3871	0.78	-1.0
87,491	-		Dshi_3871	0.78	-0.3
87,494	+		Dshi_3871	0.78	-0.0
87,522	-		Dshi_3871	0.79	+0.0
87,549	+		Dshi_3871	0.80	+0.3
87,577	-		Dshi_3871	0.80	+0.8
87,594	+		Dshi_3871	0.81	+0.6
87,594	+		Dshi_3871	0.81	+0.3
87,595	+		Dshi_3871	0.81	+1.1
87,595	+		Dshi_3871	0.81	-0.3
87,595	+		Dshi_3871	0.81	-0.4
87,599	+		Dshi_3871	0.81	+0.6
87,603	-		Dshi_3871	0.81	-0.5
87,607	-		Dshi_3871	0.81	+0.4
87,607	-		Dshi_3871	0.81	-0.7
87,613	+		Dshi_3871	0.81	-0.7
87,653	+		Dshi_3871	0.83	+0.6
87,653	+		Dshi_3871	0.83	+0.3
87,666	+		Dshi_3871	0.83	-0.7
87,685	-		Dshi_3871	0.83	-1.2
87,689	+		Dshi_3871	0.84	-0.9
87,693	+		Dshi_3871	0.84	-0.1
87,701	-		Dshi_3871	0.84	+0.0
87,739	+		Dshi_3871	0.85	-0.5
87,739	+		Dshi_3871	0.85	+0.9
87,739	+		Dshi_3871	0.85	-1.0
87,739	+		Dshi_3871	0.85	-0.1
87,749	-		Dshi_3871	0.85	+0.5
87,767	-		Dshi_3871	0.86	-0.3
87,774	+		Dshi_3871	0.86	-0.1
87,774	+		Dshi_3871	0.86	+1.5
87,828	+		Dshi_3871	0.88	+0.8
87,838	-		Dshi_3871	0.88	-0.6
87,845	+		Dshi_3871	0.88	+0.0
87,866	+		Dshi_3871	0.89	-0.4
87,896	-		Dshi_3871	0.89	-0.5
87,928	-				+0.9
87,946	-				+2.3
87,947	+				+0.8
87,948	+				+0.0
87,953	+				+0.1
87,956	-				+0.4
87,956	-				+1.0
87,965	-				-0.7
87,971	-				-0.5
87,989	+				-0.5
88,018	+				-0.4
88,026	-				+0.5
88,041	-				+0.0
88,092	-				+1.6
88,099	+				+0.3
88,104	+				+0.2
88,112	-				-0.2
88,119	+				-0.2
88,119	+				-0.4
88,119	+				-0.2
88,119	+				-1.9
88,137	-				-0.3
88,171	+				-0.3
88,171	+				-1.0
88,171	+				-0.2
88,173	+				-0.8
88,179	-				-0.2
88,179	-				-0.3
88,192	-				+1.5
88,206	+				+1.0
88,207	+				+0.9
88,207	+				-0.0
88,214	-				-0.8
88,215	-				+0.3
88,215	-				+1.5
88,218	+				+0.0
88,220	+				-0.2
88,226	-				-1.1
88,226	-				+0.0
88,226	-				-0.2
88,228	+				+0.2
88,242	+				-0.2
88,251	+				-0.0
88,252	-				-0.2
88,256	+				-0.6
88,256	+				+0.4
88,256	+				-1.3
88,256	+				-0.3
88,267	+				-0.1
88,274	+				-1.0
88,279	+				-0.4
88,282	-				+0.7
88,282	-				-0.3
88,286	+				+0.4
88,286	+				-0.5
88,286	+				-0.5
88,289	-				+1.0
88,289	-				-0.0
88,289	-				-0.7
88,293	+				+0.9
88,294	-				+0.1
88,294	-				+1.0
88,294	-				+0.4
88,294	-				-0.1
88,294	-				+0.5
88,294	-				+0.6
88,294	-				+0.3
88,298	+				-0.7
88,299	-				-0.2
88,299	-				+0.3
88,306	-				+0.1
88,311	-				+0.0
88,346	+				+0.2
88,349	+				-1.1
88,354	-				-0.5
88,355	-				-1.2
88,357	-				+0.1
88,357	-				-0.2
88,400	+				-1.3
88,400	+				+0.4
88,400	+				-0.7
88,400	+				-0.2
88,400	+				-0.0
88,400	+				+0.2
88,400	+				-1.1
88,400	+				+0.4
88,400	+				-0.5
88,400	+				+1.5
88,400	+				+0.3
88,400	+				-0.1
88,400	+				-1.0
88,400	+				-0.5
88,400	+				-0.1
88,400	+				-0.7
88,400	+				+0.1
88,400	+				+1.5
88,400	+				-0.6
88,400	+				+0.7
88,400	+				+3.1
88,400	+				-1.0
88,400	+				-1.0
88,400	+				-1.2
88,400	+				+0.2
88,400	+				+0.6
88,400	-				-0.4
88,408	-				+0.3
88,408	-				-0.4
88,408	-				-0.4
88,408	-				-1.2
88,408	-				+0.0
88,408	-				+0.7
88,408	-				-1.1
88,408	-				-0.5
88,408	-				-0.2
88,408	-				-0.3
88,408	-				-0.2
88,408	-				-0.2
88,408	-				+0.9
88,408	-				+0.0
88,408	-				-0.3
88,408	-				+0.6
88,408	-				+0.2
88,408	-				-0.4
88,408	-				-0.8
88,408	-				-0.3
88,408	-				-1.8
88,408	-				-0.3
88,408	-				-0.2
88,408	-				-0.1
88,408	-				+0.3
88,408	-				-0.2
88,408	-				-0.5
88,408	-				+0.5
88,408	-				-0.9
88,408	-				-0.1
88,408	-				+0.1
88,408	-				+0.8
88,408	-				-0.2
88,408	-				-1.0
88,408	-				-1.4
88,408	-				-0.2
88,408	-				+0.0
88,408	-				+0.3
88,408	-				-0.9
88,408	-				+0.6
88,408	-				-2.5
88,408	-				+0.5
88,408	-				+0.4
88,408	-				+0.4
88,408	-				+1.0
88,408	-				-0.7
88,408	-				+0.3
88,415	+				+0.3
88,415	+				-0.2
88,415	+				-3.8
88,415	+				+0.1
88,415	+				-0.3
88,415	+				-3.4
88,415	+				+0.4
88,415	+				+0.9
88,415	+				+0.9
88,420	+				+1.2
88,420	+				+0.4
88,423	-				-0.3
88,423	-				-2.2
88,423	-				-0.3
88,423	-				-0.4
88,423	-				+0.8
88,427	+				-0.5
88,427	+				+0.6
88,427	+				+0.8
88,427	+				-0.6
88,427	+				-1.2
88,427	+				-1.1
88,428	-				+0.6
88,428	-				+0.4
88,428	-				-0.3
88,428	-				+1.1
88,428	-				+0.4
88,438	+				+1.1
88,438	+				+0.4
88,444	-				-0.6
88,452	-				-0.2
88,470	-				-0.7
88,472	+				+0.5
88,472	+				-2.1
88,472	+				+0.4
88,479	+				-0.1
88,480	-				+0.8
88,480	-				-0.0
88,480	-				-2.4
88,480	-				-0.2
88,485	+				-0.2
88,493	+				+0.1
88,493	+				-0.2
88,496	+				-0.1
88,501	-				-0.3
88,501	-				+0.5
88,509	+				-0.6
88,509	+				-0.3
88,510	-				+0.0
88,514	+				+0.7
88,514	+				-0.2
88,514	+				+0.8
88,515	-				-1.1
88,519	+				-0.6
88,522	-				-0.6
88,522	-				-0.8
88,522	-				+0.4
88,522	-				-0.1
88,551	+				-0.4
88,551	+				-0.7
88,559	-				-0.0
88,561	+				+0.2
88,561	+				-0.1
88,569	-				+0.3
88,569	-				-0.2
88,569	-				+0.1
88,569	-				-1.0
88,571	+				-1.2
88,571	+				-0.4
88,586	+				+0.3
88,630	+				-0.0
88,631	+				-0.2
88,631	+				-0.3
88,631	+				-0.1
88,636	+				+1.5
88,639	-				+0.1
88,639	-				-1.6
88,650	+				-0.1
88,656	+				-0.9
88,663	+				-0.1
88,664	+				-0.5
88,693	+				+0.2
88,693	+				-0.3
88,699	-				+0.3
88,733	+				-0.9
88,734	-				-0.0
88,741	-				+0.2
88,756	-				+0.4
88,756	-				+0.2
88,756	-				-0.1
88,764	+				+0.8
88,772	-				+0.3
88,772	-				-0.2
88,774	+				+0.1
88,774	+				-0.3
88,782	-				+0.7
88,782	-				-0.5
88,782	-				-0.0
88,787	-				-0.6
88,787	-				+0.1
88,789	+				+0.5
88,799	+				-0.6
88,819	-				+0.7
88,826	+				+0.3
88,826	+				-0.3
88,827	+				+0.0
88,834	-				-0.8
88,834	-				+0.6
88,834	-				-0.3
88,835	-				-2.1
88,881	+				-0.3
88,881	+				-1.2
88,886	+				-0.2
88,891	+				-0.1
88,891	+				+0.1
88,891	+				-1.1
88,891	+				+0.8
88,898	+				-2.1
88,898	+				-2.2
88,899	-				-0.2
88,899	-				+0.2
88,899	-				-0.1
88,904	-				+0.4
88,906	-				+0.3
88,906	-				-0.3
88,906	-				-1.4
88,913	+				-0.2
88,980	+		Dshi_3872	0.11	+0.0
88,989	-		Dshi_3872	0.11	+0.1
89,005	+		Dshi_3872	0.11	+0.1
89,010	+		Dshi_3872	0.12	-0.3
89,013	-		Dshi_3872	0.12	-1.0
89,013	-		Dshi_3872	0.12	-0.4
89,013	-		Dshi_3872	0.12	+0.4
89,013	-		Dshi_3872	0.12	-1.8
89,052	+		Dshi_3872	0.12	-0.2
89,053	+		Dshi_3872	0.12	-0.7
89,055	-		Dshi_3872	0.12	-0.1
89,059	+		Dshi_3872	0.12	+0.3
89,061	-		Dshi_3872	0.12	-0.4
89,061	-		Dshi_3872	0.12	+0.1
89,079	-		Dshi_3872	0.13	+0.2
89,110	+		Dshi_3872	0.13	-0.2
89,188	+		Dshi_3872	0.15	-0.6
89,198	+		Dshi_3872	0.15	+0.5
89,264	-		Dshi_3872	0.16	+0.1
89,268	+		Dshi_3872	0.16	-0.1
89,268	+		Dshi_3872	0.16	+0.1
89,268	+		Dshi_3872	0.16	-0.5
89,276	-		Dshi_3872	0.16	-0.5
89,278	+		Dshi_3872	0.16	-0.2
89,286	-		Dshi_3872	0.16	-0.6
89,286	-		Dshi_3872	0.16	-0.7
89,286	-		Dshi_3872	0.16	-0.7
89,286	-		Dshi_3872	0.16	+0.2
89,286	-		Dshi_3872	0.16	-0.2
89,304	+		Dshi_3872	0.17	+0.2
89,325	+		Dshi_3872	0.17	-0.1
89,355	-		Dshi_3872	0.18	-0.2
89,386	+		Dshi_3872	0.18	-0.2
89,408	+		Dshi_3872	0.19	-0.7
89,409	+		Dshi_3872	0.19	-0.2
89,446	-		Dshi_3872	0.19	-0.6
89,446	-		Dshi_3872	0.19	-0.4
89,448	+		Dshi_3872	0.19	-0.5
89,456	-		Dshi_3872	0.19	-1.1
89,479	-		Dshi_3872	0.20	-0.1
89,479	-		Dshi_3872	0.20	-0.5
89,566	+		Dshi_3872	0.21	-0.4
89,618	-		Dshi_3872	0.22	+0.3
89,636	+		Dshi_3872	0.23	+0.5
89,767	-		Dshi_3872	0.25	-1.3
89,889	-		Dshi_3872	0.27	+0.0
89,891	+		Dshi_3872	0.27	-0.6
89,891	+		Dshi_3872	0.27	-1.0
89,891	+		Dshi_3872	0.27	-1.2
89,899	-		Dshi_3872	0.27	-0.0
89,899	-		Dshi_3872	0.27	+0.3
89,900	-		Dshi_3872	0.27	-0.4
89,936	-		Dshi_3872	0.28	-1.2
89,969	-		Dshi_3872	0.28	-0.1
90,034	-		Dshi_3872	0.30	+0.0
90,044	-		Dshi_3872	0.30	-0.4
90,052	-		Dshi_3872	0.30	-0.3
90,099	-		Dshi_3872	0.31	-1.6
90,105	-		Dshi_3872	0.31	-0.6
90,173	+		Dshi_3872	0.32	-0.6
90,218	+		Dshi_3872	0.33	-0.6
90,282	-		Dshi_3872	0.34	+0.3
90,294	+		Dshi_3872	0.34	-0.1
90,301	+		Dshi_3872	0.34	-0.8
90,309	-		Dshi_3872	0.34	+0.9
90,378	+		Dshi_3872	0.36	-0.3
90,408	-		Dshi_3872	0.36	+0.2
90,421	+		Dshi_3872	0.36	+0.8
90,429	-		Dshi_3872	0.36	+0.5
90,479	+		Dshi_3872	0.37	-0.1
90,487	-		Dshi_3872	0.38	+0.7
90,569	+		Dshi_3872	0.39	+0.3
90,602	+		Dshi_3872	0.40	-1.0
90,615	+		Dshi_3872	0.40	+0.6
90,623	-		Dshi_3872	0.40	-0.6
90,623	-		Dshi_3872	0.40	+0.1
90,712	+		Dshi_3872	0.41	-0.3
90,723	+		Dshi_3872	0.42	-2.2
90,750	+		Dshi_3872	0.42	+0.2
90,774	-		Dshi_3872	0.43	-0.2
90,793	+		Dshi_3872	0.43	-0.7
90,833	+		Dshi_3872	0.44	-0.4
90,852	+		Dshi_3872	0.44	-0.1
90,859	-		Dshi_3872	0.44	+0.4
90,860	+		Dshi_3872	0.44	+1.1
90,914	-		Dshi_3872	0.45	-0.1
90,929	+		Dshi_3872	0.45	-1.0
90,933	+		Dshi_3872	0.45	+0.5
90,939	+		Dshi_3872	0.45	-0.8
90,960	-		Dshi_3872	0.46	-0.6
90,990	+		Dshi_3872	0.46	-0.9
90,998	-		Dshi_3872	0.46	-0.1
91,074	+		Dshi_3872	0.48	-0.2
91,081	+		Dshi_3872	0.48	+0.6
91,094	-		Dshi_3872	0.48	+0.1
91,125	+		Dshi_3872	0.49	-0.3
91,223	+		Dshi_3872	0.50	-0.2
91,255	-		Dshi_3872	0.51	+1.2
91,269	-		Dshi_3872	0.51	+0.0
91,279	+		Dshi_3872	0.51	+0.3
91,300	+		Dshi_3872	0.52	-0.6
91,310	+		Dshi_3872	0.52	-0.8
91,337	+		Dshi_3872	0.52	+0.0
91,427	-		Dshi_3872	0.54	-1.1
91,446	+		Dshi_3872	0.54	-0.3
91,459	-		Dshi_3872	0.55	-0.8
91,470	+		Dshi_3872	0.55	-0.3
91,559	+		Dshi_3872	0.56	-0.4
91,559	+		Dshi_3872	0.56	+0.4
91,633	+		Dshi_3872	0.58	+0.3
91,648	+		Dshi_3872	0.58	+0.3
91,663	+		Dshi_3872	0.58	+0.0
91,671	-		Dshi_3872	0.58	+0.7
91,671	-		Dshi_3872	0.58	-0.2
91,726	-		Dshi_3872	0.59	+0.1
91,728	+		Dshi_3872	0.59	-0.3
91,830	-		Dshi_3872	0.61	-0.1
91,830	-		Dshi_3872	0.61	+0.0
91,864	-		Dshi_3872	0.62	-1.5
91,924	-		Dshi_3872	0.63	+0.3
91,977	+		Dshi_3872	0.64	-0.2
91,978	+		Dshi_3872	0.64	-0.4
91,984	+		Dshi_3872	0.64	+0.2
91,986	-		Dshi_3872	0.64	+0.0
92,007	-		Dshi_3872	0.64	+0.1
92,007	-		Dshi_3872	0.64	-0.1
92,007	-		Dshi_3872	0.64	-0.9
92,110	+		Dshi_3872	0.66	-0.3
92,118	+		Dshi_3872	0.66	-1.2
92,129	+		Dshi_3872	0.66	-0.4
92,137	-		Dshi_3872	0.67	+0.6
92,175	-		Dshi_3872	0.67	-1.3
92,274	-		Dshi_3872	0.69	+0.2
92,305	-		Dshi_3872	0.69	+0.4
92,384	+		Dshi_3872	0.71	+0.1
92,396	-		Dshi_3872	0.71	+0.4
92,410	-		Dshi_3872	0.71	-0.2
92,487	+		Dshi_3872	0.73	+0.3
92,505	-		Dshi_3872	0.73	-0.8
92,549	-		Dshi_3872	0.74	-0.1
92,614	-		Dshi_3872	0.75	-0.4
92,617	+		Dshi_3872	0.75	-0.5
92,617	+		Dshi_3872	0.75	-0.8
92,637	-		Dshi_3872	0.75	-0.6
92,687	-		Dshi_3872	0.76	-0.0
92,819	+		Dshi_3872	0.78	+0.4
92,822	-		Dshi_3872	0.79	-1.7
92,842	-		Dshi_3872	0.79	-0.3
92,926	+		Dshi_3872	0.80	+0.2
92,926	+		Dshi_3872	0.80	-0.1
92,934	-		Dshi_3872	0.81	-1.3
92,934	-		Dshi_3872	0.81	-0.2
92,972	+		Dshi_3872	0.81	-0.3
92,980	+		Dshi_3872	0.81	-0.3
92,982	+		Dshi_3872	0.81	-0.5
93,005	-		Dshi_3872	0.82	+0.0
93,025	+		Dshi_3872	0.82	+0.2
93,028	-		Dshi_3872	0.82	+0.4
93,030	+		Dshi_3872	0.82	-0.8
93,030	+		Dshi_3872	0.82	+0.7
93,038	-		Dshi_3872	0.82	-0.6
93,051	+		Dshi_3872	0.83	+0.1
93,059	-		Dshi_3872	0.83	-0.1
93,059	-		Dshi_3872	0.83	-0.5
93,144	+		Dshi_3872	0.84	+0.1
93,237	-		Dshi_3872	0.86	-0.1
93,294	+		Dshi_3872	0.87	-0.2
93,340	-		Dshi_3872	0.88	-1.2
93,348	+		Dshi_3872	0.88	+0.8
93,356	-		Dshi_3872	0.88	-0.7
93,376	+		Dshi_3872	0.88	+1.0
93,392	+		Dshi_3872	0.89	-0.1
93,400	-		Dshi_3872	0.89	+0.1
93,400	-		Dshi_3872	0.89	-0.1
93,410	-		Dshi_3872	0.89	-0.3
93,424	-		Dshi_3872	0.89	-1.8
93,456	+		Dshi_3872	0.90	-0.3
93,501	-				-0.1
93,558	-				-0.0
93,570	+				-0.1
93,573	-				-0.8
93,608	+				-1.6
93,645	+				+0.1
93,665	+				-0.4
93,673	-				-0.4
93,711	+				-0.0
93,716	+				-0.4
93,734	-				+0.4
93,736	+				+0.2
93,766	-				+0.4
93,828	+				-0.1
93,952	+				-0.7
93,988	-				-0.2
94,004	+				-0.6
94,006	-				+0.3
94,012	-				-0.7
94,021	+				-0.8
94,030	-				-1.4
94,053	-				+0.0
94,058	-				-0.5
94,060	-				+0.2
94,070	+				+0.1
94,142	+				+0.1
94,148	+				-0.0
94,167	+		Dshi_3873	0.12	-0.5
94,220	-		Dshi_3873	0.21	-1.0
94,234	+		Dshi_3873	0.23	-0.4
94,241	-				-2.2
94,263	-		Dshi_3873	0.28	+0.0
94,301	+		Dshi_3873	0.35	-0.4
94,316	+		Dshi_3873	0.37	+0.3
94,324	-		Dshi_3873	0.39	-0.2
94,326	+		Dshi_3873	0.39	+0.3
94,326	+		Dshi_3873	0.39	-0.5
94,326	+		Dshi_3873	0.39	-0.4
94,326	+		Dshi_3873	0.39	-0.3
94,334	-		Dshi_3873	0.41	-0.6
94,334	-		Dshi_3873	0.41	-0.4
94,335	+		Dshi_3873	0.41	+0.3
94,411	+		Dshi_3873	0.54	-1.7
94,411	+		Dshi_3873	0.54	+0.9
94,411	+		Dshi_3873	0.54	-0.1
94,411	+		Dshi_3873	0.54	-0.4
94,411	+		Dshi_3873	0.54	-0.7
94,419	-		Dshi_3873	0.55	+0.1
94,432	-		Dshi_3873	0.57	+0.7
94,469	-		Dshi_3873	0.64	-0.5
94,473	-		Dshi_3873	0.64	-0.5
94,506	-		Dshi_3873	0.70	-1.4
94,532	-		Dshi_3873	0.74	-1.4
94,538	+		Dshi_3873	0.75	+0.0
94,555	+		Dshi_3873	0.78	+0.2
94,555	+		Dshi_3873	0.78	+0.0
94,563	-		Dshi_3873	0.80	-0.6
94,581	-		Dshi_3873	0.83	+0.3
94,581	-		Dshi_3873	0.83	-0.1
94,617	-		Dshi_3873	0.89	-0.7
94,619	+		Dshi_3873	0.89	+1.0
94,646	+				-0.3
94,646	-				-0.1
94,649	-				-0.3
94,649	-				-0.3
94,651	+				+0.3
94,652	+				+1.1
94,653	+				-0.1
94,656	-				-0.0
94,658	+				-0.2
94,658	+				-2.2
94,659	-				+1.1
94,659	-				-1.0
94,661	-				-0.1
94,661	-				-1.8
94,661	-				-1.3
94,666	-				-0.0
94,666	-				+1.0
94,666	-				-0.5
94,671	-				+0.4
94,689	-				-0.2
94,689	-				+0.6
94,689	-				+0.8
94,689	-				+0.8
94,692	+				+0.4
94,706	-				+0.6
94,706	-				+0.2
94,706	-				-1.2
94,708	-				+0.2