Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3696 and Dshi_3697 overlap by 4 nucleotides Dshi_3697 and Dshi_3698 overlap by 4 nucleotides Dshi_3698 and Dshi_3699 are separated by 123 nucleotides
Dshi_3696: Dshi_3696 - integrase family protein (RefSeq), at 100,305 to 101,309
_3696
Dshi_3697: Dshi_3697 - integrase family protein (RefSeq), at 101,306 to 102,217
_3697
Dshi_3698: Dshi_3698 - integrase family protein (RefSeq), at 102,214 to 103,740
_3698
Dshi_3699: Dshi_3699 - putative methylase/helicase (RefSeq), at 103,864 to 106,374
_3699
Position (kb) 102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.873 kb on + strand at 103.905 kb on + strand at 103.905 kb on + strand at 103.932 kb on - strand at 103.941 kb on - strand at 103.992 kb on + strand at 103.996 kb on - strand at 104.003 kb on + strand at 104.242 kb on - strand, within Dshi_3699 at 104.252 kb on - strand, within Dshi_3699 at 104.260 kb on - strand, within Dshi_3699 at 104.309 kb on + strand, within Dshi_3699 at 104.309 kb on + strand, within Dshi_3699 at 104.314 kb on + strand, within Dshi_3699 at 104.391 kb on - strand, within Dshi_3699 at 104.402 kb on + strand, within Dshi_3699 at 104.415 kb on - strand, within Dshi_3699 at 104.469 kb on - strand, within Dshi_3699 at 104.545 kb on - strand, within Dshi_3699 at 104.550 kb on - strand, within Dshi_3699 at 104.555 kb on + strand, within Dshi_3699 at 104.555 kb on + strand, within Dshi_3699 at 104.563 kb on - strand, within Dshi_3699 at 104.572 kb on - strand, within Dshi_3699 at 104.572 kb on - strand, within Dshi_3699 at 104.600 kb on + strand, within Dshi_3699 at 104.600 kb on + strand, within Dshi_3699 at 104.600 kb on + strand, within Dshi_3699 at 104.627 kb on + strand, within Dshi_3699 at 104.635 kb on - strand, within Dshi_3699 at 104.635 kb on - strand, within Dshi_3699 at 104.656 kb on + strand, within Dshi_3699 at 104.659 kb on - strand, within Dshi_3699 at 104.708 kb on - strand, within Dshi_3699 at 104.712 kb on - strand, within Dshi_3699 at 104.738 kb on + strand, within Dshi_3699
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 103,873 + +0.3 103,905 + +0.1 103,905 + -1.0 103,932 - +0.3 103,941 - -1.5 103,992 + +0.4 103,996 - +1.6 104,003 + -0.8 104,242 - Dshi_3699 0.15 -0.2 104,252 - Dshi_3699 0.15 +1.8 104,260 - Dshi_3699 0.16 +0.5 104,309 + Dshi_3699 0.18 -0.3 104,309 + Dshi_3699 0.18 -1.0 104,314 + Dshi_3699 0.18 -0.2 104,391 - Dshi_3699 0.21 -0.8 104,402 + Dshi_3699 0.21 +0.2 104,415 - Dshi_3699 0.22 +0.8 104,469 - Dshi_3699 0.24 +0.5 104,545 - Dshi_3699 0.27 -1.5 104,550 - Dshi_3699 0.27 +0.1 104,555 + Dshi_3699 0.28 -0.7 104,555 + Dshi_3699 0.28 -0.3 104,563 - Dshi_3699 0.28 -1.4 104,572 - Dshi_3699 0.28 -0.7 104,572 - Dshi_3699 0.28 +0.9 104,600 + Dshi_3699 0.29 -0.6 104,600 + Dshi_3699 0.29 -0.2 104,600 + Dshi_3699 0.29 +0.0 104,627 + Dshi_3699 0.30 -2.9 104,635 - Dshi_3699 0.31 +0.2 104,635 - Dshi_3699 0.31 +0.9 104,656 + Dshi_3699 0.32 -0.5 104,659 - Dshi_3699 0.32 +0.2 104,708 - Dshi_3699 0.34 +1.3 104,712 - Dshi_3699 0.34 -0.3 104,738 + Dshi_3699 0.35 -0.2
Or see this region's nucleotide sequence