Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1751 and Dshi_1752 overlap by 4 nucleotides Dshi_1752 and Dshi_1753 are separated by 61 nucleotides Dshi_1753 and Dshi_1754 are separated by 90 nucleotides
Dshi_1751: Dshi_1751 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,817,193 to 1,818,239
_1751
Dshi_1752: Dshi_1752 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 1,818,236 to 1,819,111
_1752
Dshi_1753: Dshi_1753 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,819,173 to 1,819,949
_1753
Dshi_1754: Dshi_1754 - hypothetical protein (RefSeq), at 1,820,040 to 1,820,456
_1754
Position (kb)
1818
1819
1820 Strain fitness (log2 ratio)
-2
-1
0
1 at 1817.345 kb on + strand, within Dshi_1751 at 1817.388 kb on - strand, within Dshi_1751 at 1817.508 kb on + strand, within Dshi_1751 at 1817.898 kb on - strand, within Dshi_1751 at 1817.960 kb on - strand, within Dshi_1751 at 1818.070 kb on + strand, within Dshi_1751 at 1818.609 kb on + strand, within Dshi_1752 at 1818.778 kb on - strand, within Dshi_1752 at 1818.839 kb on + strand, within Dshi_1752 at 1818.847 kb on - strand, within Dshi_1752 at 1818.910 kb on - strand, within Dshi_1752 at 1819.029 kb on + strand at 1819.142 kb on + strand at 1819.252 kb on - strand, within Dshi_1753 at 1819.419 kb on - strand, within Dshi_1753 at 1819.439 kb on - strand, within Dshi_1753 at 1819.456 kb on - strand, within Dshi_1753 at 1819.500 kb on - strand, within Dshi_1753 at 1819.615 kb on - strand, within Dshi_1753 at 1819.656 kb on + strand, within Dshi_1753 at 1819.766 kb on - strand, within Dshi_1753 at 1819.811 kb on - strand, within Dshi_1753 at 1819.936 kb on - strand at 1819.945 kb on + strand at 1819.953 kb on - strand at 1820.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,817,345 + Dshi_1751 0.15 -0.4 1,817,388 - Dshi_1751 0.19 +0.2 1,817,508 + Dshi_1751 0.30 +0.4 1,817,898 - Dshi_1751 0.67 +1.0 1,817,960 - Dshi_1751 0.73 -0.5 1,818,070 + Dshi_1751 0.84 +0.7 1,818,609 + Dshi_1752 0.43 -0.0 1,818,778 - Dshi_1752 0.62 -0.2 1,818,839 + Dshi_1752 0.69 -0.8 1,818,847 - Dshi_1752 0.70 -0.8 1,818,910 - Dshi_1752 0.77 -2.0 1,819,029 + -0.5 1,819,142 + +0.2 1,819,252 - Dshi_1753 0.10 +0.9 1,819,419 - Dshi_1753 0.32 -2.2 1,819,439 - Dshi_1753 0.34 -0.2 1,819,456 - Dshi_1753 0.36 -0.3 1,819,500 - Dshi_1753 0.42 +0.7 1,819,615 - Dshi_1753 0.57 -1.0 1,819,656 + Dshi_1753 0.62 -0.6 1,819,766 - Dshi_1753 0.76 -0.2 1,819,811 - Dshi_1753 0.82 -1.6 1,819,936 - -0.5 1,819,945 + +0.7 1,819,953 - -0.6 1,820,011 - -0.4
Or see this region's nucleotide sequence