Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1752

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1751 and Dshi_1752 overlap by 4 nucleotidesDshi_1752 and Dshi_1753 are separated by 61 nucleotidesDshi_1753 and Dshi_1754 are separated by 90 nucleotides Dshi_1751: Dshi_1751 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,817,193 to 1,818,239 _1751 Dshi_1752: Dshi_1752 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 1,818,236 to 1,819,111 _1752 Dshi_1753: Dshi_1753 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,819,173 to 1,819,949 _1753 Dshi_1754: Dshi_1754 - hypothetical protein (RefSeq), at 1,820,040 to 1,820,456 _1754 Position (kb) 1818 1819 1820Strain fitness (log2 ratio) -2 -1 0 1at 1817.345 kb on + strand, within Dshi_1751at 1817.388 kb on - strand, within Dshi_1751at 1817.508 kb on + strand, within Dshi_1751at 1817.898 kb on - strand, within Dshi_1751at 1817.960 kb on - strand, within Dshi_1751at 1818.070 kb on + strand, within Dshi_1751at 1818.609 kb on + strand, within Dshi_1752at 1818.778 kb on - strand, within Dshi_1752at 1818.839 kb on + strand, within Dshi_1752at 1818.847 kb on - strand, within Dshi_1752at 1818.910 kb on - strand, within Dshi_1752at 1819.029 kb on + strandat 1819.142 kb on + strandat 1819.252 kb on - strand, within Dshi_1753at 1819.419 kb on - strand, within Dshi_1753at 1819.439 kb on - strand, within Dshi_1753at 1819.456 kb on - strand, within Dshi_1753at 1819.500 kb on - strand, within Dshi_1753at 1819.615 kb on - strand, within Dshi_1753at 1819.656 kb on + strand, within Dshi_1753at 1819.766 kb on - strand, within Dshi_1753at 1819.811 kb on - strand, within Dshi_1753at 1819.936 kb on - strandat 1819.945 kb on + strandat 1819.953 kb on - strandat 1820.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,817,345 + Dshi_1751 0.15 -0.4
1,817,388 - Dshi_1751 0.19 +0.2
1,817,508 + Dshi_1751 0.30 +0.4
1,817,898 - Dshi_1751 0.67 +1.0
1,817,960 - Dshi_1751 0.73 -0.5
1,818,070 + Dshi_1751 0.84 +0.7
1,818,609 + Dshi_1752 0.43 -0.0
1,818,778 - Dshi_1752 0.62 -0.2
1,818,839 + Dshi_1752 0.69 -0.8
1,818,847 - Dshi_1752 0.70 -0.8
1,818,910 - Dshi_1752 0.77 -2.0
1,819,029 + -0.5
1,819,142 + +0.2
1,819,252 - Dshi_1753 0.10 +0.9
1,819,419 - Dshi_1753 0.32 -2.2
1,819,439 - Dshi_1753 0.34 -0.2
1,819,456 - Dshi_1753 0.36 -0.3
1,819,500 - Dshi_1753 0.42 +0.7
1,819,615 - Dshi_1753 0.57 -1.0
1,819,656 + Dshi_1753 0.62 -0.6
1,819,766 - Dshi_1753 0.76 -0.2
1,819,811 - Dshi_1753 0.82 -1.6
1,819,936 - -0.5
1,819,945 + +0.7
1,819,953 - -0.6
1,820,011 - -0.4

Or see this region's nucleotide sequence