Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0645 and Dshi_0646 are separated by 58 nucleotides Dshi_0646 and Dshi_0647 are separated by 191 nucleotides
Dshi_0645: Dshi_0645 - TRAP transporter solute receptor, TAXI family (RefSeq), at 644,406 to 645,413
_0645
Dshi_0646: Dshi_0646 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 645,472 to 647,574
_0646
Dshi_0647: Dshi_0647 - hypothetical protein (RefSeq), at 647,766 to 650,513
_0647
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -2
-1
0
1 at 644.552 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.571 kb on - strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.856 kb on + strand, within Dshi_0645 at 644.964 kb on - strand, within Dshi_0645 at 645.068 kb on + strand, within Dshi_0645 at 645.106 kb on - strand, within Dshi_0645 at 645.170 kb on + strand, within Dshi_0645 at 645.208 kb on + strand, within Dshi_0645 at 645.406 kb on - strand at 645.406 kb on - strand at 645.657 kb on - strand at 645.662 kb on - strand at 645.708 kb on - strand, within Dshi_0646 at 645.844 kb on - strand, within Dshi_0646 at 645.878 kb on - strand, within Dshi_0646 at 645.909 kb on + strand, within Dshi_0646 at 645.911 kb on - strand, within Dshi_0646 at 646.026 kb on - strand, within Dshi_0646 at 646.154 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646 at 646.476 kb on - strand, within Dshi_0646 at 646.507 kb on + strand, within Dshi_0646 at 646.558 kb on + strand, within Dshi_0646 at 646.709 kb on + strand, within Dshi_0646 at 646.751 kb on + strand, within Dshi_0646 at 646.784 kb on + strand, within Dshi_0646 at 646.835 kb on - strand, within Dshi_0646 at 646.848 kb on - strand, within Dshi_0646 at 646.925 kb on - strand, within Dshi_0646 at 646.925 kb on - strand, within Dshi_0646 at 647.343 kb on - strand, within Dshi_0646 at 647.395 kb on + strand at 647.485 kb on + strand at 647.581 kb on + strand at 647.615 kb on - strand at 647.644 kb on + strand at 647.682 kb on + strand at 647.690 kb on - strand at 647.817 kb on + strand at 647.825 kb on - strand at 647.871 kb on - strand at 647.871 kb on - strand at 648.083 kb on - strand, within Dshi_0647 at 648.219 kb on + strand, within Dshi_0647 at 648.220 kb on - strand, within Dshi_0647 at 648.230 kb on + strand, within Dshi_0647 at 648.230 kb on + strand, within Dshi_0647 at 648.287 kb on - strand, within Dshi_0647 at 648.354 kb on - strand, within Dshi_0647 at 648.356 kb on + strand, within Dshi_0647 at 648.398 kb on + strand, within Dshi_0647 at 648.461 kb on + strand, within Dshi_0647 at 648.540 kb on + strand, within Dshi_0647
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 644,552 + Dshi_0645 0.14 +1.2 644,563 + Dshi_0645 0.16 +1.6 644,563 + Dshi_0645 0.16 +0.2 644,571 - Dshi_0645 0.16 +0.8 644,654 + Dshi_0645 0.25 -0.9 644,654 + Dshi_0645 0.25 -0.5 644,856 + Dshi_0645 0.45 +0.3 644,964 - Dshi_0645 0.55 -0.2 645,068 + Dshi_0645 0.66 -1.8 645,106 - Dshi_0645 0.69 +0.9 645,170 + Dshi_0645 0.76 -0.3 645,208 + Dshi_0645 0.80 +1.2 645,406 - -0.3 645,406 - -0.3 645,657 - +0.3 645,662 - -1.6 645,708 - Dshi_0646 0.11 +1.0 645,844 - Dshi_0646 0.18 -1.2 645,878 - Dshi_0646 0.19 -0.0 645,909 + Dshi_0646 0.21 +1.3 645,911 - Dshi_0646 0.21 -0.3 646,026 - Dshi_0646 0.26 +0.4 646,154 + Dshi_0646 0.32 -1.0 646,185 + Dshi_0646 0.34 -0.5 646,185 + Dshi_0646 0.34 +0.5 646,476 - Dshi_0646 0.48 -0.3 646,507 + Dshi_0646 0.49 +0.2 646,558 + Dshi_0646 0.52 -2.3 646,709 + Dshi_0646 0.59 +1.0 646,751 + Dshi_0646 0.61 +0.5 646,784 + Dshi_0646 0.62 +1.0 646,835 - Dshi_0646 0.65 +1.1 646,848 - Dshi_0646 0.65 -0.6 646,925 - Dshi_0646 0.69 -0.9 646,925 - Dshi_0646 0.69 +1.4 647,343 - Dshi_0646 0.89 +0.1 647,395 + +0.4 647,485 + +0.1 647,581 + -1.7 647,615 - -0.2 647,644 + -0.2 647,682 + -1.4 647,690 - +0.2 647,817 + +0.1 647,825 - -0.1 647,871 - +0.3 647,871 - +0.8 648,083 - Dshi_0647 0.12 +0.0 648,219 + Dshi_0647 0.16 -1.2 648,220 - Dshi_0647 0.17 -0.2 648,230 + Dshi_0647 0.17 +0.8 648,230 + Dshi_0647 0.17 +0.2 648,287 - Dshi_0647 0.19 +0.7 648,354 - Dshi_0647 0.21 -0.2 648,356 + Dshi_0647 0.21 +0.5 648,398 + Dshi_0647 0.23 -0.0 648,461 + Dshi_0647 0.25 +0.2 648,540 + Dshi_0647 0.28 +0.0
Or see this region's nucleotide sequence