Strain Fitness in Shewanella oneidensis MR-1 around SO3501

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,651,392	+		SO_3500	0.14	-1.3
3,651,392	+		SO_3500	0.14	+0.9
3,651,392	+		SO_3500	0.14	-0.2
3,651,392	+		SO_3500	0.14	+0.3
3,651,400	-		SO_3500	0.15	-0.1
3,651,400	-		SO_3500	0.15	-0.5
3,651,473	+		SO_3500	0.23	-0.1
3,651,473	+		SO_3500	0.23	-0.2
3,651,473	+		SO_3500	0.23	-0.3
3,651,481	-		SO_3500	0.24	-0.5
3,651,481	-		SO_3500	0.24	-0.5
3,651,481	-		SO_3500	0.24	+0.9
3,651,481	-		SO_3500	0.24	+0.1
3,651,481	-		SO_3500	0.24	+0.3
3,651,481	-		SO_3500	0.24	+0.3
3,651,481	-		SO_3500	0.24	-1.3
3,651,481	-		SO_3500	0.24	-0.1
3,651,481	-		SO_3500	0.24	-0.3
3,651,481	-		SO_3500	0.24	-0.8
3,651,481	-		SO_3500	0.24	-0.4
3,651,524	-		SO_3500	0.29	+0.2
3,651,627	+		SO_3500	0.41	-0.1
3,651,635	-		SO_3500	0.41	-0.1
3,651,643	+		SO_3500	0.42	+0.2
3,651,731	+		SO_3500	0.52	-0.9
3,651,847	-		SO_3500	0.66	-0.0
3,651,950	-		SO_3500	0.77	-1.5
3,651,957	-		SO_3500	0.78	-0.1
3,651,960	+		SO_3500	0.78	-1.0
3,651,990	-		SO_3500	0.82	-0.2
3,652,114	-				-0.1
3,652,225	-		SO3501	0.15	-1.7
3,652,236	-		SO3501	0.18	-0.8
3,652,364	+		SO3501	0.52	-0.6
3,652,468	+		SO3501	0.80	-1.1
3,652,508	+				-1.0
3,652,599	+				-0.4
3,652,607	-				-0.1
3,652,745	+		SO3502	0.18	+0.0
3,652,758	+		SO3502	0.19	-0.6
3,652,799	+		SO3502	0.24	-0.2
3,652,799	+		SO3502	0.24	-0.3
3,652,805	-		SO3502	0.25	-0.5
3,652,805	-		SO3502	0.25	-0.0
3,652,877	+		SO3502	0.33	+0.1
3,652,877	+		SO3502	0.33	+0.2
3,652,877	+		SO3502	0.33	-0.6
3,652,877	+		SO3502	0.33	+2.0
3,652,877	+		SO3502	0.33	-0.3
3,652,885	-		SO3502	0.34	+0.1
3,652,885	-		SO3502	0.34	+0.3
3,652,923	+		SO3502	0.39	-0.6
3,652,923	+		SO3502	0.39	+0.1
3,652,931	-		SO3502	0.40	-0.1
3,652,931	-		SO3502	0.40	-0.2
3,652,958	+		SO3502	0.43	-1.8
3,652,966	-		SO3502	0.44	+0.9
3,652,995	-		SO3502	0.47	+1.4
3,653,005	-		SO3502	0.49	-0.5
3,653,058	+		SO3502	0.55	-0.4
3,653,126	+		SO3502	0.63	-0.4
3,653,126	+		SO3502	0.63	-0.5
3,653,159	+		SO3502	0.67	-0.2
3,653,354	+				+0.8
3,653,354	+				-0.6
3,653,379	+				-0.2