Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_872 and HP15_873 are separated by 14 nucleotides HP15_873 and HP15_874 are separated by 50 nucleotides HP15_874 and HP15_875 are separated by 86 nucleotides HP15_875 and HP15_876 are separated by 27 nucleotides
HP15_872: HP15_872 - nitroreductase-like protein, at 891,140 to 892,168
_872
HP15_873: HP15_873 - conserved hypothetical protein, at 892,183 to 892,563
_873
HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183
_874
HP15_875: HP15_875 - protein containing DUF159, at 893,270 to 893,983
_875
HP15_876: HP15_876 - class I peptide chain release factor, at 894,011 to 894,424
_876
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.638 kb on - strand, within HP15_872 at 891.658 kb on + strand, within HP15_872 at 891.711 kb on + strand, within HP15_872 at 891.738 kb on + strand, within HP15_872 at 891.789 kb on + strand, within HP15_872 at 891.797 kb on - strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.881 kb on - strand, within HP15_872 at 891.892 kb on + strand, within HP15_872 at 892.055 kb on - strand, within HP15_872 at 892.175 kb on - strand at 892.176 kb on + strand at 892.176 kb on + strand at 892.184 kb on - strand at 892.184 kb on - strand at 892.189 kb on - strand at 892.214 kb on + strand at 892.282 kb on + strand, within HP15_873 at 892.341 kb on - strand, within HP15_873 at 892.416 kb on + strand, within HP15_873 at 892.531 kb on - strand at 892.531 kb on - strand at 892.580 kb on - strand at 892.580 kb on - strand at 892.706 kb on + strand, within HP15_874 at 892.788 kb on + strand, within HP15_874 at 892.902 kb on + strand, within HP15_874 at 892.910 kb on - strand, within HP15_874 at 893.018 kb on - strand, within HP15_874 at 893.110 kb on + strand, within HP15_874 at 893.261 kb on + strand at 893.267 kb on + strand at 893.275 kb on - strand at 893.337 kb on + strand at 893.416 kb on + strand, within HP15_875 at 893.424 kb on - strand, within HP15_875 at 893.465 kb on + strand, within HP15_875 at 893.471 kb on - strand, within HP15_875 at 893.540 kb on - strand, within HP15_875 at 893.662 kb on + strand, within HP15_875 at 893.712 kb on - strand, within HP15_875 at 893.901 kb on - strand, within HP15_875 at 893.944 kb on - strand at 893.978 kb on + strand at 893.995 kb on + strand at 894.010 kb on - strand at 894.030 kb on + strand at 894.062 kb on + strand, within HP15_876 at 894.073 kb on + strand, within HP15_876 at 894.098 kb on - strand, within HP15_876
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 891,638 - HP15_872 0.48 +0.2 891,658 + HP15_872 0.50 -0.4 891,711 + HP15_872 0.55 -0.0 891,738 + HP15_872 0.58 +0.4 891,789 + HP15_872 0.63 -0.5 891,797 - HP15_872 0.64 +0.7 891,879 + HP15_872 0.72 -0.4 891,879 + HP15_872 0.72 -1.5 891,881 - HP15_872 0.72 +1.2 891,892 + HP15_872 0.73 +0.4 892,055 - HP15_872 0.89 +1.1 892,175 - +0.7 892,176 + +0.4 892,176 + -1.5 892,184 - -0.2 892,184 - +0.6 892,189 - +2.6 892,214 + +0.2 892,282 + HP15_873 0.26 -0.7 892,341 - HP15_873 0.41 -0.5 892,416 + HP15_873 0.61 +0.2 892,531 - -0.2 892,531 - -1.6 892,580 - +0.0 892,580 - +1.5 892,706 + HP15_874 0.16 -3.0 892,788 + HP15_874 0.31 -0.4 892,902 + HP15_874 0.51 -0.6 892,910 - HP15_874 0.52 -1.7 893,018 - HP15_874 0.71 -1.6 893,110 + HP15_874 0.87 -2.0 893,261 + -0.4 893,267 + -0.9 893,275 - +0.3 893,337 + +0.4 893,416 + HP15_875 0.20 -0.8 893,424 - HP15_875 0.22 +0.1 893,465 + HP15_875 0.27 +0.2 893,471 - HP15_875 0.28 +0.2 893,540 - HP15_875 0.38 +0.7 893,662 + HP15_875 0.55 -0.9 893,712 - HP15_875 0.62 -0.8 893,901 - HP15_875 0.88 +0.9 893,944 - +0.1 893,978 + +0.6 893,995 + +1.2 894,010 - -1.8 894,030 + -0.0 894,062 + HP15_876 0.12 -1.1 894,073 + HP15_876 0.15 -0.5 894,098 - HP15_876 0.21 +1.8
Or see this region's nucleotide sequence