Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_799 and HP15_800 overlap by 1 nucleotides HP15_800 and HP15_802 are separated by 6 nucleotides HP15_802 and HP15_801 are separated by 141 nucleotides HP15_801 and HP15_803 are separated by 26 nucleotides
HP15_799: HP15_799 - undecaprenyl pyrophosphate phosphatase-like protein, at 814,173 to 814,535
_799
HP15_800: HP15_800 - protein YhiQ, at 814,535 to 815,374
_800
HP15_802: HP15_802 - glycerol-3-phosphate acyltransferase, at 815,381 to 817,849
_802
HP15_801: HP15_801 - NADH pyrophosphatase, at 817,991 to 818,818
_801
HP15_803: HP15_803 - glutamate racemase, at 818,845 to 819,678
_803
Position (kb) 815
816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 814.430 kb on - strand, within HP15_799 at 814.570 kb on + strand at 814.623 kb on - strand, within HP15_800 at 814.714 kb on - strand, within HP15_800 at 814.739 kb on - strand, within HP15_800 at 814.888 kb on - strand, within HP15_800 at 814.919 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.955 kb on - strand, within HP15_800 at 814.991 kb on + strand, within HP15_800 at 815.020 kb on - strand, within HP15_800 at 815.062 kb on + strand, within HP15_800 at 815.342 kb on + strand at 815.429 kb on + strand at 815.435 kb on - strand at 815.473 kb on + strand at 815.481 kb on - strand at 815.491 kb on - strand at 815.491 kb on - strand at 815.522 kb on - strand at 815.546 kb on + strand at 815.675 kb on + strand, within HP15_802 at 815.720 kb on + strand, within HP15_802 at 815.735 kb on - strand, within HP15_802 at 815.899 kb on - strand, within HP15_802 at 815.899 kb on - strand, within HP15_802 at 815.906 kb on + strand, within HP15_802 at 815.972 kb on + strand, within HP15_802 at 816.131 kb on - strand, within HP15_802 at 816.141 kb on - strand, within HP15_802 at 816.167 kb on - strand, within HP15_802 at 816.167 kb on - strand, within HP15_802 at 816.167 kb on - strand, within HP15_802 at 816.305 kb on - strand, within HP15_802 at 816.324 kb on + strand, within HP15_802 at 816.476 kb on - strand, within HP15_802 at 816.476 kb on - strand, within HP15_802 at 816.476 kb on - strand, within HP15_802 at 816.571 kb on - strand, within HP15_802 at 816.592 kb on - strand, within HP15_802 at 816.593 kb on - strand, within HP15_802 at 816.696 kb on + strand, within HP15_802 at 816.887 kb on + strand, within HP15_802 at 816.936 kb on + strand, within HP15_802 at 816.944 kb on - strand, within HP15_802 at 817.011 kb on + strand, within HP15_802 at 817.019 kb on + strand, within HP15_802 at 817.174 kb on - strand, within HP15_802 at 817.178 kb on + strand, within HP15_802 at 817.196 kb on + strand, within HP15_802 at 817.260 kb on + strand, within HP15_802 at 817.268 kb on - strand, within HP15_802 at 817.469 kb on + strand, within HP15_802 at 817.651 kb on + strand at 817.678 kb on + strand at 817.730 kb on + strand at 817.779 kb on - strand at 817.900 kb on - strand at 818.208 kb on - strand, within HP15_801 at 818.567 kb on + strand, within HP15_801
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 814,430 - HP15_799 0.71 -1.2 814,570 + -0.3 814,623 - HP15_800 0.10 -0.1 814,714 - HP15_800 0.21 +1.1 814,739 - HP15_800 0.24 +0.8 814,888 - HP15_800 0.42 +2.2 814,919 + HP15_800 0.46 -1.0 814,947 + HP15_800 0.49 +1.7 814,947 + HP15_800 0.49 +0.7 814,955 - HP15_800 0.50 -1.2 814,991 + HP15_800 0.54 +0.6 815,020 - HP15_800 0.58 +1.2 815,062 + HP15_800 0.63 -0.1 815,342 + +0.4 815,429 + -2.2 815,435 - -1.0 815,473 + -0.6 815,481 - +0.2 815,491 - -0.1 815,491 - +0.7 815,522 - +0.2 815,546 + -0.8 815,675 + HP15_802 0.12 +0.9 815,720 + HP15_802 0.14 +1.4 815,735 - HP15_802 0.14 +0.5 815,899 - HP15_802 0.21 -0.5 815,899 - HP15_802 0.21 +0.6 815,906 + HP15_802 0.21 +1.2 815,972 + HP15_802 0.24 -0.1 816,131 - HP15_802 0.30 +0.2 816,141 - HP15_802 0.31 +3.7 816,167 - HP15_802 0.32 -0.8 816,167 - HP15_802 0.32 -0.5 816,167 - HP15_802 0.32 +0.4 816,305 - HP15_802 0.37 +0.6 816,324 + HP15_802 0.38 -0.9 816,476 - HP15_802 0.44 -1.2 816,476 - HP15_802 0.44 -2.0 816,476 - HP15_802 0.44 +0.3 816,571 - HP15_802 0.48 +0.6 816,592 - HP15_802 0.49 +1.2 816,593 - HP15_802 0.49 +1.3 816,696 + HP15_802 0.53 +0.6 816,887 + HP15_802 0.61 -1.0 816,936 + HP15_802 0.63 +1.2 816,944 - HP15_802 0.63 -0.1 817,011 + HP15_802 0.66 -0.7 817,019 + HP15_802 0.66 +1.5 817,174 - HP15_802 0.73 +0.4 817,178 + HP15_802 0.73 +0.1 817,196 + HP15_802 0.74 +1.5 817,260 + HP15_802 0.76 -1.1 817,268 - HP15_802 0.76 +0.1 817,469 + HP15_802 0.85 -1.6 817,651 + -0.7 817,678 + +0.5 817,730 + +0.8 817,779 - +1.2 817,900 - +0.1 818,208 - HP15_801 0.26 +1.5 818,567 + HP15_801 0.70 -0.8
Or see this region's nucleotide sequence