Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_659 and HP15_660 are separated by 1 nucleotides HP15_660 and HP15_661 are separated by 325 nucleotides HP15_661 and HP15_662 are separated by 2 nucleotides HP15_662 and HP15_663 overlap by 8 nucleotides
HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568
_659
HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953
_660
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
HP15_662: HP15_662 - phage tail protein I, at 684,061 to 684,636
_662
HP15_663: HP15_663 - phage baseplate assembly protein, at 684,629 to 685,549
_663
Position (kb) 683
684
685 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 682.324 kb on - strand, within HP15_659 at 682.325 kb on - strand, within HP15_659 at 682.338 kb on + strand, within HP15_659 at 682.359 kb on - strand, within HP15_659 at 682.417 kb on + strand, within HP15_659 at 682.514 kb on + strand at 682.554 kb on + strand at 682.573 kb on + strand at 682.573 kb on + strand at 682.581 kb on - strand at 682.581 kb on - strand at 682.639 kb on + strand, within HP15_660 at 682.640 kb on + strand, within HP15_660 at 682.644 kb on + strand, within HP15_660 at 682.831 kb on + strand, within HP15_660 at 682.834 kb on - strand, within HP15_660 at 682.875 kb on + strand, within HP15_660 at 682.910 kb on + strand, within HP15_660 at 683.149 kb on + strand at 683.155 kb on + strand at 683.228 kb on + strand at 683.285 kb on - strand at 683.285 kb on - strand at 683.321 kb on + strand at 683.345 kb on - strand at 683.371 kb on + strand, within HP15_661 at 683.438 kb on + strand, within HP15_661 at 683.456 kb on - strand, within HP15_661 at 683.647 kb on + strand, within HP15_661 at 683.728 kb on - strand, within HP15_661 at 683.769 kb on - strand, within HP15_661 at 683.840 kb on - strand, within HP15_661 at 683.845 kb on - strand, within HP15_661 at 683.903 kb on + strand, within HP15_661 at 683.908 kb on + strand, within HP15_661 at 683.911 kb on - strand, within HP15_661 at 683.950 kb on + strand, within HP15_661 at 684.024 kb on + strand at 684.032 kb on - strand at 684.122 kb on - strand, within HP15_662 at 684.187 kb on - strand, within HP15_662 at 684.194 kb on + strand, within HP15_662 at 684.196 kb on + strand, within HP15_662 at 684.196 kb on + strand, within HP15_662 at 684.406 kb on - strand, within HP15_662 at 684.474 kb on + strand, within HP15_662 at 684.488 kb on + strand, within HP15_662 at 684.495 kb on - strand, within HP15_662 at 684.567 kb on + strand, within HP15_662 at 684.635 kb on - strand at 684.682 kb on + strand at 684.716 kb on + strand at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.729 kb on - strand, within HP15_663 at 684.746 kb on + strand, within HP15_663 at 684.773 kb on + strand, within HP15_663 at 684.901 kb on - strand, within HP15_663 at 684.968 kb on + strand, within HP15_663 at 684.970 kb on + strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 685.009 kb on + strand, within HP15_663 at 685.030 kb on - strand, within HP15_663
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 682,324 - HP15_659 0.69 +1.1 682,325 - HP15_659 0.69 +1.9 682,338 + HP15_659 0.70 +0.6 682,359 - HP15_659 0.73 +1.7 682,417 + HP15_659 0.81 +1.7 682,514 + +1.3 682,554 + +0.1 682,573 + +0.5 682,573 + +0.7 682,581 - +2.1 682,581 - +1.8 682,639 + HP15_660 0.18 +3.9 682,640 + HP15_660 0.18 +1.1 682,644 + HP15_660 0.19 -0.2 682,831 + HP15_660 0.68 +0.1 682,834 - HP15_660 0.69 +1.7 682,875 + HP15_660 0.79 +1.6 682,910 + HP15_660 0.89 -0.2 683,149 + +1.2 683,155 + -0.1 683,228 + +3.1 683,285 - +0.2 683,285 - +1.3 683,321 + +0.6 683,345 - +1.2 683,371 + HP15_661 0.12 +0.8 683,438 + HP15_661 0.20 -0.9 683,456 - HP15_661 0.23 +1.5 683,647 + HP15_661 0.47 +1.3 683,728 - HP15_661 0.58 +0.7 683,769 - HP15_661 0.63 -0.6 683,840 - HP15_661 0.72 +1.1 683,845 - HP15_661 0.73 +1.7 683,903 + HP15_661 0.80 +0.0 683,908 + HP15_661 0.81 +0.7 683,911 - HP15_661 0.81 +0.8 683,950 + HP15_661 0.86 +1.4 684,024 + +0.8 684,032 - +1.1 684,122 - HP15_662 0.11 +1.2 684,187 - HP15_662 0.22 -0.5 684,194 + HP15_662 0.23 +0.9 684,196 + HP15_662 0.23 +0.1 684,196 + HP15_662 0.23 +1.1 684,406 - HP15_662 0.60 +4.6 684,474 + HP15_662 0.72 +0.5 684,488 + HP15_662 0.74 +3.4 684,495 - HP15_662 0.75 +0.3 684,567 + HP15_662 0.88 +0.4 684,635 - +0.1 684,682 + +1.1 684,716 + +1.4 684,721 + HP15_663 0.10 +0.7 684,721 + HP15_663 0.10 +0.8 684,721 + HP15_663 0.10 +1.3 684,729 - HP15_663 0.11 +1.4 684,746 + HP15_663 0.13 +1.7 684,773 + HP15_663 0.16 +0.8 684,901 - HP15_663 0.30 +1.4 684,968 + HP15_663 0.37 -0.2 684,970 + HP15_663 0.37 +0.6 684,976 - HP15_663 0.38 +0.5 684,976 - HP15_663 0.38 +0.9 684,976 - HP15_663 0.38 -1.5 685,009 + HP15_663 0.41 +3.1 685,030 - HP15_663 0.44 +1.7
Or see this region's nucleotide sequence