Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_633 and HP15_634 are separated by 27 nucleotides HP15_634 and HP15_635 are separated by 139 nucleotides HP15_635 and HP15_636 are separated by 160 nucleotides
HP15_633: HP15_633 - dTDP-4-dehydrorhamnose reductase-like protein, at 654,918 to 655,751
_633
HP15_634: HP15_634 - transcriptional regulator, Crp/Fnr family, at 655,779 to 656,528
_634
HP15_635: HP15_635 - 3-oxoacyl-(acyl carrier protein) synthase I, at 656,668 to 657,852
_635
HP15_636: HP15_636 - GTP-binding protein, ribosome biogenesis, YlqF, at 658,013 to 658,951
_636
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 655.959 kb on - strand, within HP15_634 at 656.069 kb on + strand, within HP15_634 at 656.240 kb on - strand, within HP15_634 at 656.271 kb on + strand, within HP15_634 at 656.399 kb on + strand, within HP15_634 at 656.658 kb on - strand at 656.658 kb on - strand at 656.658 kb on - strand at 656.868 kb on - strand, within HP15_635 at 656.870 kb on - strand, within HP15_635 at 657.011 kb on + strand, within HP15_635 at 657.019 kb on - strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.047 kb on - strand, within HP15_635 at 657.052 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.345 kb on - strand, within HP15_635 at 657.350 kb on + strand, within HP15_635 at 657.454 kb on + strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.682 kb on - strand, within HP15_635 at 658.019 kb on - strand at 658.126 kb on + strand, within HP15_636 at 658.134 kb on - strand, within HP15_636 at 658.134 kb on - strand, within HP15_636
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 655,959 - HP15_634 0.24 -1.2 656,069 + HP15_634 0.39 -1.3 656,240 - HP15_634 0.61 +2.1 656,271 + HP15_634 0.66 -0.5 656,399 + HP15_634 0.83 -0.2 656,658 - +0.3 656,658 - +1.2 656,658 - -0.6 656,868 - HP15_635 0.17 +0.8 656,870 - HP15_635 0.17 +2.2 657,011 + HP15_635 0.29 -1.9 657,019 - HP15_635 0.30 +2.9 657,039 + HP15_635 0.31 +2.3 657,039 + HP15_635 0.31 +4.1 657,047 - HP15_635 0.32 -0.5 657,052 - HP15_635 0.32 +2.4 657,089 - HP15_635 0.36 -0.1 657,089 - HP15_635 0.36 +0.2 657,345 - HP15_635 0.57 +1.2 657,350 + HP15_635 0.58 +1.5 657,454 + HP15_635 0.66 +1.6 657,513 - HP15_635 0.71 +1.5 657,513 - HP15_635 0.71 +0.4 657,682 - HP15_635 0.86 +1.5 658,019 - +1.5 658,126 + HP15_636 0.12 +0.1 658,134 - HP15_636 0.13 +1.7 658,134 - HP15_636 0.13 +2.1
Or see this region's nucleotide sequence