Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_488 and HP15_490 are separated by 98 nucleotides HP15_490 and HP15_489 are separated by 15 nucleotides
HP15_488: HP15_488 - ABC transporter ATP-binding protein-like protein, at 503,193 to 504,854
_488
HP15_490: HP15_490 - hypothetical protein, at 504,953 to 505,237
_490
HP15_489: HP15_489 - glycine hydroxymethyltransferase, at 505,253 to 506,506
_489
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 503.954 kb on + strand, within HP15_488 at 503.995 kb on + strand, within HP15_488 at 504.014 kb on + strand, within HP15_488 at 504.216 kb on - strand, within HP15_488 at 504.308 kb on + strand, within HP15_488 at 504.333 kb on + strand, within HP15_488 at 504.333 kb on + strand, within HP15_488 at 504.346 kb on - strand, within HP15_488 at 504.346 kb on - strand, within HP15_488 at 504.369 kb on - strand, within HP15_488 at 504.543 kb on - strand, within HP15_488 at 504.703 kb on + strand at 504.713 kb on + strand at 504.835 kb on + strand at 504.843 kb on - strand at 504.913 kb on + strand at 504.921 kb on - strand at 504.944 kb on - strand at 504.997 kb on + strand, within HP15_490 at 505.005 kb on - strand, within HP15_490 at 505.005 kb on - strand, within HP15_490 at 505.019 kb on + strand, within HP15_490 at 505.027 kb on + strand, within HP15_490 at 505.042 kb on + strand, within HP15_490 at 505.050 kb on - strand, within HP15_490 at 505.100 kb on + strand, within HP15_490 at 505.143 kb on - strand, within HP15_490
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 503,954 + HP15_488 0.46 +0.6 503,995 + HP15_488 0.48 +0.9 504,014 + HP15_488 0.49 +1.1 504,216 - HP15_488 0.62 +0.0 504,308 + HP15_488 0.67 -1.3 504,333 + HP15_488 0.69 -0.6 504,333 + HP15_488 0.69 +1.1 504,346 - HP15_488 0.69 -0.2 504,346 - HP15_488 0.69 -1.7 504,369 - HP15_488 0.71 -0.1 504,543 - HP15_488 0.81 +0.0 504,703 + -0.3 504,713 + +1.1 504,835 + -0.4 504,843 - +0.9 504,913 + +0.3 504,921 - +1.1 504,944 - +0.0 504,997 + HP15_490 0.15 +1.1 505,005 - HP15_490 0.18 -1.6 505,005 - HP15_490 0.18 +0.5 505,019 + HP15_490 0.23 -2.5 505,027 + HP15_490 0.26 +0.6 505,042 + HP15_490 0.31 -1.5 505,050 - HP15_490 0.34 +1.1 505,100 + HP15_490 0.52 +1.1 505,143 - HP15_490 0.67 +0.1
Or see this region's nucleotide sequence