Strain Fitness in Marinobacter adhaerens HP15 around HP15_4027

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4025 and HP15_4026 overlap by 4 nucleotidesHP15_4026 and HP15_4027 are separated by 14 nucleotidesHP15_4027 and HP15_4028 are separated by 56 nucleotidesHP15_4028 and HP15_4029 are separated by 10 nucleotides HP15_4025: HP15_4025 - phenol hydroxylase component, at 4,262,764 to 4,263,765 _4025 HP15_4026: HP15_4026 - monooxygenase component MmoB/DmpM, at 4,263,762 to 4,264,031 _4026 HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593 _4027 HP15_4028: HP15_4028 - phenol hydroxylase conserved region, at 4,265,650 to 4,266,018 _4028 HP15_4029: HP15_4029 - oxidoreductase FAD/NAD(P)-binding domain protein, at 4,266,029 to 4,267,090 _4029 Position (kb) 4264 4265 4266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4263.064 kb on - strand, within HP15_4025at 4263.064 kb on - strand, within HP15_4025at 4263.154 kb on - strand, within HP15_4025at 4263.256 kb on - strand, within HP15_4025at 4263.274 kb on + strand, within HP15_4025at 4263.323 kb on - strand, within HP15_4025at 4263.409 kb on - strand, within HP15_4025at 4263.412 kb on + strand, within HP15_4025at 4263.508 kb on - strand, within HP15_4025at 4263.530 kb on + strand, within HP15_4025at 4263.530 kb on + strand, within HP15_4025at 4263.538 kb on - strand, within HP15_4025at 4263.538 kb on - strand, within HP15_4025at 4263.538 kb on - strand, within HP15_4025at 4263.552 kb on + strand, within HP15_4025at 4263.552 kb on + strand, within HP15_4025at 4263.604 kb on - strand, within HP15_4025at 4263.754 kb on - strandat 4263.938 kb on + strand, within HP15_4026at 4264.115 kb on + strandat 4264.149 kb on - strandat 4264.288 kb on + strand, within HP15_4027at 4264.369 kb on - strand, within HP15_4027at 4264.384 kb on + strand, within HP15_4027at 4264.397 kb on - strand, within HP15_4027at 4264.408 kb on + strand, within HP15_4027at 4264.408 kb on + strand, within HP15_4027at 4264.445 kb on - strand, within HP15_4027at 4264.472 kb on - strand, within HP15_4027at 4264.518 kb on - strand, within HP15_4027at 4264.665 kb on - strand, within HP15_4027at 4264.743 kb on - strand, within HP15_4027at 4264.764 kb on + strand, within HP15_4027at 4264.772 kb on - strand, within HP15_4027at 4264.785 kb on + strand, within HP15_4027at 4264.825 kb on - strand, within HP15_4027at 4264.851 kb on + strand, within HP15_4027at 4264.934 kb on - strand, within HP15_4027at 4264.963 kb on + strand, within HP15_4027at 4264.971 kb on - strand, within HP15_4027at 4264.971 kb on - strand, within HP15_4027at 4264.971 kb on - strand, within HP15_4027at 4264.980 kb on - strand, within HP15_4027at 4265.158 kb on + strand, within HP15_4027at 4265.166 kb on - strand, within HP15_4027at 4265.386 kb on + strand, within HP15_4027at 4265.524 kb on - strandat 4265.550 kb on - strandat 4265.700 kb on + strand, within HP15_4028at 4265.707 kb on + strand, within HP15_4028at 4265.773 kb on + strand, within HP15_4028at 4265.805 kb on - strand, within HP15_4028at 4265.827 kb on + strand, within HP15_4028at 4265.851 kb on + strand, within HP15_4028at 4265.893 kb on - strand, within HP15_4028at 4265.933 kb on + strand, within HP15_4028at 4265.941 kb on - strand, within HP15_4028at 4265.941 kb on - strand, within HP15_4028at 4265.941 kb on - strand, within HP15_4028at 4265.976 kb on + strand, within HP15_4028at 4265.981 kb on + strand, within HP15_4028at 4265.989 kb on - strandat 4265.989 kb on - strandat 4266.027 kb on - strandat 4266.109 kb on + strandat 4266.109 kb on + strandat 4266.166 kb on + strand, within HP15_4029at 4266.180 kb on - strand, within HP15_4029at 4266.216 kb on + strand, within HP15_4029at 4266.228 kb on - strand, within HP15_4029at 4266.241 kb on + strand, within HP15_4029at 4266.332 kb on + strand, within HP15_4029at 4266.332 kb on + strand, within HP15_4029at 4266.337 kb on + strand, within HP15_4029at 4266.340 kb on - strand, within HP15_4029at 4266.363 kb on + strand, within HP15_4029at 4266.382 kb on + strand, within HP15_4029at 4266.382 kb on + strand, within HP15_4029at 4266.390 kb on - strand, within HP15_4029at 4266.431 kb on + strand, within HP15_4029at 4266.439 kb on + strand, within HP15_4029at 4266.439 kb on - strand, within HP15_4029at 4266.495 kb on - strand, within HP15_4029

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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4,263,064 - HP15_4025 0.30 +0.5
4,263,064 - HP15_4025 0.30 +1.3
4,263,154 - HP15_4025 0.39 +0.0
4,263,256 - HP15_4025 0.49 +0.4
4,263,274 + HP15_4025 0.51 +0.8
4,263,323 - HP15_4025 0.56 +1.6
4,263,409 - HP15_4025 0.64 -0.2
4,263,412 + HP15_4025 0.65 +0.8
4,263,508 - HP15_4025 0.74 -0.1
4,263,530 + HP15_4025 0.76 -1.4
4,263,530 + HP15_4025 0.76 -1.1
4,263,538 - HP15_4025 0.77 -2.5
4,263,538 - HP15_4025 0.77 -0.6
4,263,538 - HP15_4025 0.77 -0.6
4,263,552 + HP15_4025 0.79 -0.7
4,263,552 + HP15_4025 0.79 -0.2
4,263,604 - HP15_4025 0.84 -1.5
4,263,754 - -0.3
4,263,938 + HP15_4026 0.65 +1.3
4,264,115 + +0.1
4,264,149 - +0.9
4,264,288 + HP15_4027 0.16 +1.3
4,264,369 - HP15_4027 0.21 -0.2
4,264,384 + HP15_4027 0.22 -0.4
4,264,397 - HP15_4027 0.23 +2.3
4,264,408 + HP15_4027 0.23 -0.4
4,264,408 + HP15_4027 0.23 -1.7
4,264,445 - HP15_4027 0.26 +0.9
4,264,472 - HP15_4027 0.28 -1.3
4,264,518 - HP15_4027 0.30 -0.2
4,264,665 - HP15_4027 0.40 -0.7
4,264,743 - HP15_4027 0.45 -0.1
4,264,764 + HP15_4027 0.46 -1.1
4,264,772 - HP15_4027 0.47 +0.3
4,264,785 + HP15_4027 0.48 +0.3
4,264,825 - HP15_4027 0.50 -0.5
4,264,851 + HP15_4027 0.52 -0.3
4,264,934 - HP15_4027 0.57 +0.3
4,264,963 + HP15_4027 0.59 +0.7
4,264,971 - HP15_4027 0.60 +1.3
4,264,971 - HP15_4027 0.60 -0.3
4,264,971 - HP15_4027 0.60 +0.7
4,264,980 - HP15_4027 0.60 -0.0
4,265,158 + HP15_4027 0.72 -0.4
4,265,166 - HP15_4027 0.72 -0.8
4,265,386 + HP15_4027 0.87 -0.3
4,265,524 - +1.3
4,265,550 - -0.3
4,265,700 + HP15_4028 0.14 +0.0
4,265,707 + HP15_4028 0.15 +0.4
4,265,773 + HP15_4028 0.33 -0.1
4,265,805 - HP15_4028 0.42 +0.1
4,265,827 + HP15_4028 0.48 +0.8
4,265,851 + HP15_4028 0.54 -0.9
4,265,893 - HP15_4028 0.66 -0.5
4,265,933 + HP15_4028 0.77 -0.9
4,265,941 - HP15_4028 0.79 +0.8
4,265,941 - HP15_4028 0.79 -0.0
4,265,941 - HP15_4028 0.79 -0.3
4,265,976 + HP15_4028 0.88 -0.5
4,265,981 + HP15_4028 0.90 -1.3
4,265,989 - +0.1
4,265,989 - -0.1
4,266,027 - -0.2
4,266,109 + -0.5
4,266,109 + -1.3
4,266,166 + HP15_4029 0.13 +0.3
4,266,180 - HP15_4029 0.14 +0.0
4,266,216 + HP15_4029 0.18 -0.6
4,266,228 - HP15_4029 0.19 -0.6
4,266,241 + HP15_4029 0.20 -0.4
4,266,332 + HP15_4029 0.29 +0.1
4,266,332 + HP15_4029 0.29 +0.9
4,266,337 + HP15_4029 0.29 -0.3
4,266,340 - HP15_4029 0.29 +0.0
4,266,363 + HP15_4029 0.31 +1.3
4,266,382 + HP15_4029 0.33 +0.7
4,266,382 + HP15_4029 0.33 +0.2
4,266,390 - HP15_4029 0.34 -0.4
4,266,431 + HP15_4029 0.38 +3.6
4,266,439 + HP15_4029 0.39 +1.4
4,266,439 - HP15_4029 0.39 +1.5
4,266,495 - HP15_4029 0.44 +1.3

Or see this region's nucleotide sequence