Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3934 and HP15_3935 are separated by 21 nucleotides HP15_3935 and HP15_3936 are separated by 74 nucleotides
HP15_3934: HP15_3934 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,161,682 to 4,163,103
_3934
HP15_3935: HP15_3935 - pyruvate carboxylase subunit B, at 4,163,125 to 4,164,924
_3935
HP15_3936: HP15_3936 - acyl-CoA dehydrogenase domain protein, at 4,164,999 to 4,166,168
_3936
Position (kb) 4163
4164
4165 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4162.246 kb on + strand, within HP15_3934 at 4162.252 kb on + strand, within HP15_3934 at 4162.292 kb on - strand, within HP15_3934 at 4162.455 kb on + strand, within HP15_3934 at 4162.557 kb on + strand, within HP15_3934 at 4162.714 kb on + strand, within HP15_3934 at 4162.769 kb on + strand, within HP15_3934 at 4162.777 kb on - strand, within HP15_3934 at 4162.794 kb on + strand, within HP15_3934 at 4162.986 kb on + strand at 4163.178 kb on + strand at 4163.243 kb on - strand at 4163.244 kb on - strand at 4163.262 kb on - strand at 4163.289 kb on - strand at 4163.389 kb on - strand, within HP15_3935 at 4163.559 kb on + strand, within HP15_3935 at 4163.567 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.652 kb on + strand, within HP15_3935 at 4163.670 kb on - strand, within HP15_3935 at 4163.675 kb on - strand, within HP15_3935 at 4163.684 kb on + strand, within HP15_3935 at 4163.692 kb on - strand, within HP15_3935 at 4163.714 kb on + strand, within HP15_3935 at 4163.771 kb on - strand, within HP15_3935 at 4163.890 kb on - strand, within HP15_3935 at 4163.906 kb on + strand, within HP15_3935 at 4163.914 kb on - strand, within HP15_3935 at 4163.919 kb on + strand, within HP15_3935 at 4163.995 kb on - strand, within HP15_3935 at 4163.997 kb on - strand, within HP15_3935 at 4164.016 kb on - strand, within HP15_3935 at 4164.032 kb on + strand, within HP15_3935 at 4164.041 kb on - strand, within HP15_3935 at 4164.326 kb on + strand, within HP15_3935 at 4164.334 kb on - strand, within HP15_3935 at 4164.389 kb on - strand, within HP15_3935 at 4164.413 kb on - strand, within HP15_3935 at 4164.642 kb on + strand, within HP15_3935 at 4164.684 kb on - strand, within HP15_3935 at 4164.689 kb on - strand, within HP15_3935 at 4164.759 kb on + strand at 4164.778 kb on + strand at 4164.786 kb on - strand at 4164.887 kb on - strand at 4164.892 kb on - strand at 4165.064 kb on + strand at 4165.175 kb on - strand, within HP15_3936 at 4165.231 kb on + strand, within HP15_3936 at 4165.358 kb on + strand, within HP15_3936 at 4165.366 kb on - strand, within HP15_3936 at 4165.366 kb on - strand, within HP15_3936 at 4165.396 kb on + strand, within HP15_3936 at 4165.468 kb on + strand, within HP15_3936 at 4165.622 kb on - strand, within HP15_3936 at 4165.763 kb on + strand, within HP15_3936 at 4165.771 kb on - strand, within HP15_3936 at 4165.771 kb on - strand, within HP15_3936 at 4165.911 kb on - strand, within HP15_3936
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 4,162,246 + HP15_3934 0.40 -0.1 4,162,252 + HP15_3934 0.40 -0.7 4,162,292 - HP15_3934 0.43 +1.5 4,162,455 + HP15_3934 0.54 -0.3 4,162,557 + HP15_3934 0.62 +0.9 4,162,714 + HP15_3934 0.73 -0.7 4,162,769 + HP15_3934 0.76 -1.3 4,162,777 - HP15_3934 0.77 -1.6 4,162,794 + HP15_3934 0.78 +0.8 4,162,986 + -0.3 4,163,178 + -0.7 4,163,243 - +2.3 4,163,244 - +0.3 4,163,262 - +0.4 4,163,289 - -0.5 4,163,389 - HP15_3935 0.15 +0.6 4,163,559 + HP15_3935 0.24 -2.0 4,163,567 - HP15_3935 0.25 +0.3 4,163,615 - HP15_3935 0.27 +0.3 4,163,615 - HP15_3935 0.27 -1.4 4,163,615 - HP15_3935 0.27 +1.7 4,163,652 + HP15_3935 0.29 +0.3 4,163,670 - HP15_3935 0.30 -0.7 4,163,675 - HP15_3935 0.31 +0.2 4,163,684 + HP15_3935 0.31 +1.3 4,163,692 - HP15_3935 0.32 +0.4 4,163,714 + HP15_3935 0.33 -0.7 4,163,771 - HP15_3935 0.36 +0.9 4,163,890 - HP15_3935 0.42 -0.5 4,163,906 + HP15_3935 0.43 -0.3 4,163,914 - HP15_3935 0.44 +0.3 4,163,919 + HP15_3935 0.44 +1.2 4,163,995 - HP15_3935 0.48 +0.7 4,163,997 - HP15_3935 0.48 -0.1 4,164,016 - HP15_3935 0.49 +1.1 4,164,032 + HP15_3935 0.50 +2.9 4,164,041 - HP15_3935 0.51 -1.5 4,164,326 + HP15_3935 0.67 -0.6 4,164,334 - HP15_3935 0.67 +0.1 4,164,389 - HP15_3935 0.70 -0.3 4,164,413 - HP15_3935 0.72 -0.6 4,164,642 + HP15_3935 0.84 +1.3 4,164,684 - HP15_3935 0.87 -0.1 4,164,689 - HP15_3935 0.87 +1.7 4,164,759 + +0.3 4,164,778 + +0.3 4,164,786 - -1.7 4,164,887 - +0.9 4,164,892 - +1.2 4,165,064 + -1.6 4,165,175 - HP15_3936 0.15 -0.4 4,165,231 + HP15_3936 0.20 -2.3 4,165,358 + HP15_3936 0.31 +1.3 4,165,366 - HP15_3936 0.31 +0.1 4,165,366 - HP15_3936 0.31 +0.9 4,165,396 + HP15_3936 0.34 +1.0 4,165,468 + HP15_3936 0.40 +0.3 4,165,622 - HP15_3936 0.53 -1.3 4,165,763 + HP15_3936 0.65 -0.7 4,165,771 - HP15_3936 0.66 -0.3 4,165,771 - HP15_3936 0.66 +0.3 4,165,911 - HP15_3936 0.78 -1.1
Or see this region's nucleotide sequence