Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3925 and HP15_3926 are separated by 30 nucleotides HP15_3926 and HP15_3927 are separated by 20 nucleotides HP15_3927 and HP15_3928 are separated by 341 nucleotides
HP15_3925: HP15_3925 - phosphotransferase enzyme family protein, at 4,154,015 to 4,155,079
_3925
HP15_3926: HP15_3926 - acyl-CoA synthetase, at 4,155,110 to 4,156,774
_3926
HP15_3927: HP15_3927 - protein containing helix-turn-helix type 3 domain, at 4,156,795 to 4,157,160
_3927
HP15_3928: HP15_3928 - acyl-CoA dehydrogenase domain protein, at 4,157,502 to 4,158,638
_3928
Position (kb)
4155
4156
4157 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4154.142 kb on - strand, within HP15_3925 at 4154.185 kb on + strand, within HP15_3925 at 4154.187 kb on + strand, within HP15_3925 at 4154.195 kb on - strand, within HP15_3925 at 4154.257 kb on + strand, within HP15_3925 at 4154.310 kb on - strand, within HP15_3925 at 4154.344 kb on + strand, within HP15_3925 at 4154.369 kb on - strand, within HP15_3925 at 4154.390 kb on + strand, within HP15_3925 at 4154.434 kb on - strand, within HP15_3925 at 4154.559 kb on - strand, within HP15_3925 at 4154.587 kb on + strand, within HP15_3925 at 4154.617 kb on + strand, within HP15_3925 at 4154.629 kb on + strand, within HP15_3925 at 4154.708 kb on + strand, within HP15_3925 at 4154.772 kb on + strand, within HP15_3925 at 4154.780 kb on - strand, within HP15_3925 at 4154.799 kb on - strand, within HP15_3925 at 4154.839 kb on - strand, within HP15_3925 at 4154.909 kb on + strand, within HP15_3925 at 4155.034 kb on + strand at 4155.095 kb on - strand at 4155.138 kb on - strand at 4155.196 kb on - strand at 4155.221 kb on - strand at 4155.221 kb on - strand at 4155.373 kb on + strand, within HP15_3926 at 4155.501 kb on + strand, within HP15_3926 at 4155.534 kb on - strand, within HP15_3926 at 4155.584 kb on + strand, within HP15_3926 at 4155.587 kb on - strand, within HP15_3926 at 4155.592 kb on - strand, within HP15_3926 at 4155.592 kb on - strand, within HP15_3926 at 4155.592 kb on - strand, within HP15_3926 at 4155.624 kb on - strand, within HP15_3926 at 4155.629 kb on - strand, within HP15_3926 at 4155.686 kb on - strand, within HP15_3926 at 4155.756 kb on + strand, within HP15_3926 at 4155.791 kb on + strand, within HP15_3926 at 4156.087 kb on + strand, within HP15_3926 at 4156.095 kb on - strand, within HP15_3926 at 4156.097 kb on - strand, within HP15_3926 at 4156.129 kb on + strand, within HP15_3926 at 4156.137 kb on - strand, within HP15_3926 at 4156.142 kb on + strand, within HP15_3926 at 4156.142 kb on - strand, within HP15_3926 at 4156.203 kb on - strand, within HP15_3926 at 4156.275 kb on + strand, within HP15_3926 at 4156.326 kb on - strand, within HP15_3926 at 4156.503 kb on + strand, within HP15_3926 at 4156.600 kb on - strand, within HP15_3926 at 4156.633 kb on + strand at 4156.665 kb on + strand at 4156.945 kb on - strand, within HP15_3927 at 4157.070 kb on + strand, within HP15_3927 at 4157.078 kb on - strand, within HP15_3927 at 4157.078 kb on - strand, within HP15_3927 at 4157.087 kb on + strand, within HP15_3927 at 4157.087 kb on + strand, within HP15_3927 at 4157.090 kb on - strand, within HP15_3927 at 4157.097 kb on + strand, within HP15_3927 at 4157.353 kb on + strand at 4157.413 kb on + strand at 4157.439 kb on + strand at 4157.478 kb on - strand at 4157.518 kb on + strand at 4157.518 kb on + strand at 4157.539 kb on - strand at 4157.603 kb on - strand at 4157.603 kb on - strand at 4157.637 kb on + strand, within HP15_3928 at 4157.687 kb on - strand, within HP15_3928
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 4,154,142 - HP15_3925 0.12 -1.9 4,154,185 + HP15_3925 0.16 -2.3 4,154,187 + HP15_3925 0.16 -1.1 4,154,195 - HP15_3925 0.17 +0.3 4,154,257 + HP15_3925 0.23 +0.0 4,154,310 - HP15_3925 0.28 +0.1 4,154,344 + HP15_3925 0.31 +1.0 4,154,369 - HP15_3925 0.33 +0.8 4,154,390 + HP15_3925 0.35 -0.7 4,154,434 - HP15_3925 0.39 +0.5 4,154,559 - HP15_3925 0.51 +0.7 4,154,587 + HP15_3925 0.54 +1.3 4,154,617 + HP15_3925 0.57 -0.7 4,154,629 + HP15_3925 0.58 -1.3 4,154,708 + HP15_3925 0.65 +0.4 4,154,772 + HP15_3925 0.71 -0.7 4,154,780 - HP15_3925 0.72 -0.0 4,154,799 - HP15_3925 0.74 +0.0 4,154,839 - HP15_3925 0.77 +0.7 4,154,909 + HP15_3925 0.84 -0.7 4,155,034 + +1.5 4,155,095 - -0.4 4,155,138 - +1.3 4,155,196 - +1.9 4,155,221 - -0.1 4,155,221 - +0.5 4,155,373 + HP15_3926 0.16 -0.5 4,155,501 + HP15_3926 0.23 +1.6 4,155,534 - HP15_3926 0.25 +0.4 4,155,584 + HP15_3926 0.28 +0.3 4,155,587 - HP15_3926 0.29 +0.5 4,155,592 - HP15_3926 0.29 +0.6 4,155,592 - HP15_3926 0.29 +1.4 4,155,592 - HP15_3926 0.29 -0.3 4,155,624 - HP15_3926 0.31 -3.5 4,155,629 - HP15_3926 0.31 +0.4 4,155,686 - HP15_3926 0.35 +1.0 4,155,756 + HP15_3926 0.39 -0.1 4,155,791 + HP15_3926 0.41 +2.9 4,156,087 + HP15_3926 0.59 -0.0 4,156,095 - HP15_3926 0.59 +0.6 4,156,097 - HP15_3926 0.59 -0.0 4,156,129 + HP15_3926 0.61 +0.4 4,156,137 - HP15_3926 0.62 +3.3 4,156,142 + HP15_3926 0.62 -0.4 4,156,142 - HP15_3926 0.62 +0.8 4,156,203 - HP15_3926 0.66 -0.7 4,156,275 + HP15_3926 0.70 +0.3 4,156,326 - HP15_3926 0.73 +1.2 4,156,503 + HP15_3926 0.84 -1.9 4,156,600 - HP15_3926 0.89 +2.9 4,156,633 + -0.4 4,156,665 + +1.0 4,156,945 - HP15_3927 0.41 +1.5 4,157,070 + HP15_3927 0.75 +0.7 4,157,078 - HP15_3927 0.77 -0.2 4,157,078 - HP15_3927 0.77 -0.1 4,157,087 + HP15_3927 0.80 -0.5 4,157,087 + HP15_3927 0.80 -1.6 4,157,090 - HP15_3927 0.81 +1.9 4,157,097 + HP15_3927 0.83 +0.9 4,157,353 + -1.3 4,157,413 + -1.4 4,157,439 + -1.3 4,157,478 - -0.5 4,157,518 + -0.5 4,157,518 + +1.3 4,157,539 - -0.7 4,157,603 - -0.1 4,157,603 - -0.2 4,157,637 + HP15_3928 0.12 -0.8 4,157,687 - HP15_3928 0.16 -0.7
Or see this region's nucleotide sequence