Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3915 and HP15_3916 are separated by 166 nucleotides HP15_3916 and HP15_3917 are separated by 94 nucleotides HP15_3917 and HP15_3918 are separated by 123 nucleotides
HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583
_3915
HP15_3916: HP15_3916 - sodium-dependent transporter family protein, at 4,145,750 to 4,147,147
_3916
HP15_3917: HP15_3917 - conserved hypothetical protein, secreted, at 4,147,242 to 4,147,811
_3917
HP15_3918: HP15_3918 - trap-type mannitol/chloroaromatic compound transport system, large permease component, at 4,147,935 to 4,149,245
_3918
Position (kb)
4145
4146
4147
4148 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4145.011 kb on + strand, within HP15_3915 at 4145.162 kb on + strand, within HP15_3915 at 4145.281 kb on + strand, within HP15_3915 at 4145.313 kb on - strand, within HP15_3915 at 4145.360 kb on + strand, within HP15_3915 at 4145.365 kb on + strand, within HP15_3915 at 4145.754 kb on - strand at 4145.882 kb on - strand at 4146.128 kb on - strand, within HP15_3916 at 4146.224 kb on - strand, within HP15_3916 at 4146.304 kb on + strand, within HP15_3916 at 4146.440 kb on + strand, within HP15_3916 at 4146.472 kb on - strand, within HP15_3916 at 4146.507 kb on + strand, within HP15_3916 at 4146.589 kb on - strand, within HP15_3916 at 4146.644 kb on - strand, within HP15_3916 at 4146.701 kb on + strand, within HP15_3916 at 4146.711 kb on - strand, within HP15_3916 at 4146.827 kb on - strand, within HP15_3916 at 4146.827 kb on - strand, within HP15_3916 at 4146.827 kb on - strand, within HP15_3916 at 4146.936 kb on + strand, within HP15_3916 at 4146.944 kb on - strand, within HP15_3916 at 4147.033 kb on + strand at 4147.077 kb on + strand at 4147.223 kb on + strand at 4147.268 kb on + strand at 4147.354 kb on + strand, within HP15_3917 at 4147.359 kb on + strand, within HP15_3917 at 4147.367 kb on - strand, within HP15_3917 at 4147.378 kb on + strand, within HP15_3917 at 4147.425 kb on - strand, within HP15_3917 at 4147.435 kb on - strand, within HP15_3917 at 4147.538 kb on - strand, within HP15_3917 at 4147.554 kb on + strand, within HP15_3917 at 4147.554 kb on + strand, within HP15_3917 at 4147.562 kb on - strand, within HP15_3917 at 4147.562 kb on - strand, within HP15_3917 at 4147.580 kb on + strand, within HP15_3917 at 4147.680 kb on - strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.743 kb on + strand, within HP15_3917 at 4147.757 kb on + strand at 4147.792 kb on + strand at 4147.830 kb on + strand at 4147.838 kb on - strand at 4147.892 kb on + strand at 4148.085 kb on - strand, within HP15_3918 at 4148.085 kb on - strand, within HP15_3918
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 4,145,011 + HP15_3915 0.65 -0.0 4,145,162 + HP15_3915 0.74 +3.9 4,145,281 + HP15_3915 0.81 -0.5 4,145,313 - HP15_3915 0.83 -0.0 4,145,360 + HP15_3915 0.86 +0.7 4,145,365 + HP15_3915 0.86 -0.2 4,145,754 - +0.8 4,145,882 - +0.1 4,146,128 - HP15_3916 0.27 -2.1 4,146,224 - HP15_3916 0.34 +0.3 4,146,304 + HP15_3916 0.40 +0.7 4,146,440 + HP15_3916 0.49 +1.5 4,146,472 - HP15_3916 0.52 +0.5 4,146,507 + HP15_3916 0.54 +0.9 4,146,589 - HP15_3916 0.60 +0.6 4,146,644 - HP15_3916 0.64 +1.8 4,146,701 + HP15_3916 0.68 +2.5 4,146,711 - HP15_3916 0.69 +0.1 4,146,827 - HP15_3916 0.77 +0.4 4,146,827 - HP15_3916 0.77 +1.3 4,146,827 - HP15_3916 0.77 +0.8 4,146,936 + HP15_3916 0.85 +1.6 4,146,944 - HP15_3916 0.85 +0.3 4,147,033 + +1.0 4,147,077 + +1.6 4,147,223 + +2.6 4,147,268 + -1.9 4,147,354 + HP15_3917 0.20 +0.1 4,147,359 + HP15_3917 0.21 -0.4 4,147,367 - HP15_3917 0.22 -0.0 4,147,378 + HP15_3917 0.24 +0.4 4,147,425 - HP15_3917 0.32 -0.0 4,147,435 - HP15_3917 0.34 -0.6 4,147,538 - HP15_3917 0.52 -0.0 4,147,554 + HP15_3917 0.55 -1.4 4,147,554 + HP15_3917 0.55 -0.5 4,147,562 - HP15_3917 0.56 -0.3 4,147,562 - HP15_3917 0.56 -1.4 4,147,580 + HP15_3917 0.59 +0.5 4,147,680 - HP15_3917 0.77 +0.5 4,147,743 + HP15_3917 0.88 -0.5 4,147,743 + HP15_3917 0.88 +0.3 4,147,743 + HP15_3917 0.88 +0.6 4,147,743 + HP15_3917 0.88 -3.9 4,147,757 + +1.5 4,147,792 + -0.2 4,147,830 + +0.4 4,147,838 - -0.3 4,147,892 + -2.1 4,148,085 - HP15_3918 0.11 -0.4 4,148,085 - HP15_3918 0.11 -1.5
Or see this region's nucleotide sequence