Strain Fitness in Marinobacter adhaerens HP15 around HP15_3891

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3890 and HP15_3891 overlap by 18 nucleotidesHP15_3891 and HP15_3892 overlap by 22 nucleotides HP15_3890: HP15_3890 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 4,119,099 to 4,121,456 _3890 HP15_3891: HP15_3891 - permease, at 4,121,439 to 4,122,209 _3891 HP15_3892: HP15_3892 - conserved hypothetical protein, secreted, at 4,122,188 to 4,123,327 _3892 Position (kb) 4121 4122 4123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4120.576 kb on - strand, within HP15_3890at 4120.576 kb on - strand, within HP15_3890at 4120.576 kb on - strand, within HP15_3890at 4120.603 kb on + strand, within HP15_3890at 4120.608 kb on - strand, within HP15_3890at 4120.610 kb on + strand, within HP15_3890at 4120.637 kb on + strand, within HP15_3890at 4120.772 kb on - strand, within HP15_3890at 4120.803 kb on - strand, within HP15_3890at 4120.934 kb on - strand, within HP15_3890at 4120.948 kb on - strand, within HP15_3890at 4120.953 kb on + strand, within HP15_3890at 4120.971 kb on - strand, within HP15_3890at 4121.014 kb on + strand, within HP15_3890at 4121.018 kb on + strand, within HP15_3890at 4121.082 kb on - strand, within HP15_3890at 4121.151 kb on - strand, within HP15_3890at 4121.152 kb on - strand, within HP15_3890at 4121.173 kb on - strand, within HP15_3890at 4121.325 kb on + strandat 4121.367 kb on + strandat 4121.375 kb on - strandat 4121.382 kb on + strandat 4121.385 kb on - strandat 4121.557 kb on - strand, within HP15_3891at 4121.698 kb on + strand, within HP15_3891at 4121.706 kb on - strand, within HP15_3891at 4121.706 kb on - strand, within HP15_3891at 4121.706 kb on - strand, within HP15_3891at 4121.706 kb on - strand, within HP15_3891at 4121.713 kb on + strand, within HP15_3891at 4121.721 kb on - strand, within HP15_3891at 4121.824 kb on + strand, within HP15_3891at 4121.850 kb on - strand, within HP15_3891at 4121.919 kb on + strand, within HP15_3891at 4122.177 kb on + strandat 4122.215 kb on + strandat 4122.251 kb on - strandat 4122.273 kb on - strandat 4122.287 kb on - strandat 4122.362 kb on - strand, within HP15_3892at 4122.506 kb on + strand, within HP15_3892at 4122.578 kb on - strand, within HP15_3892at 4122.612 kb on + strand, within HP15_3892at 4122.620 kb on + strand, within HP15_3892at 4122.742 kb on - strand, within HP15_3892at 4122.743 kb on - strand, within HP15_3892at 4122.755 kb on + strand, within HP15_3892at 4122.803 kb on + strand, within HP15_3892at 4122.816 kb on + strand, within HP15_3892at 4122.857 kb on - strand, within HP15_3892at 4122.960 kb on - strand, within HP15_3892at 4122.974 kb on + strand, within HP15_3892at 4122.978 kb on + strand, within HP15_3892at 4122.982 kb on - strand, within HP15_3892at 4123.000 kb on - strand, within HP15_3892at 4123.014 kb on + strand, within HP15_3892at 4123.204 kb on - strand, within HP15_3892

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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4,120,576 - HP15_3890 0.63 +3.8
4,120,576 - HP15_3890 0.63 +1.2
4,120,576 - HP15_3890 0.63 +0.4
4,120,603 + HP15_3890 0.64 +0.0
4,120,608 - HP15_3890 0.64 +1.2
4,120,610 + HP15_3890 0.64 +0.3
4,120,637 + HP15_3890 0.65 -0.4
4,120,772 - HP15_3890 0.71 +0.8
4,120,803 - HP15_3890 0.72 -0.3
4,120,934 - HP15_3890 0.78 +0.4
4,120,948 - HP15_3890 0.78 -1.2
4,120,953 + HP15_3890 0.79 -0.6
4,120,971 - HP15_3890 0.79 -1.8
4,121,014 + HP15_3890 0.81 -0.4
4,121,018 + HP15_3890 0.81 -0.8
4,121,082 - HP15_3890 0.84 +0.2
4,121,151 - HP15_3890 0.87 +0.7
4,121,152 - HP15_3890 0.87 +0.2
4,121,173 - HP15_3890 0.88 -0.6
4,121,325 + -2.7
4,121,367 + +0.0
4,121,375 - +1.6
4,121,382 + -0.4
4,121,385 - -1.6
4,121,557 - HP15_3891 0.15 +0.3
4,121,698 + HP15_3891 0.34 -1.1
4,121,706 - HP15_3891 0.35 +0.7
4,121,706 - HP15_3891 0.35 -0.5
4,121,706 - HP15_3891 0.35 -0.0
4,121,706 - HP15_3891 0.35 +1.1
4,121,713 + HP15_3891 0.36 -0.1
4,121,721 - HP15_3891 0.37 -3.0
4,121,824 + HP15_3891 0.50 -0.8
4,121,850 - HP15_3891 0.53 -0.7
4,121,919 + HP15_3891 0.62 -1.6
4,122,177 + +0.7
4,122,215 + -0.8
4,122,251 - +0.7
4,122,273 - -0.8
4,122,287 - -1.1
4,122,362 - HP15_3892 0.15 -0.5
4,122,506 + HP15_3892 0.28 -0.3
4,122,578 - HP15_3892 0.34 -0.2
4,122,612 + HP15_3892 0.37 +0.2
4,122,620 + HP15_3892 0.38 -1.7
4,122,742 - HP15_3892 0.49 +0.2
4,122,743 - HP15_3892 0.49 +1.5
4,122,755 + HP15_3892 0.50 -0.4
4,122,803 + HP15_3892 0.54 -1.7
4,122,816 + HP15_3892 0.55 +0.1
4,122,857 - HP15_3892 0.59 -0.7
4,122,960 - HP15_3892 0.68 +0.3
4,122,974 + HP15_3892 0.69 -1.0
4,122,978 + HP15_3892 0.69 +0.3
4,122,982 - HP15_3892 0.70 +0.3
4,123,000 - HP15_3892 0.71 -1.4
4,123,014 + HP15_3892 0.72 +2.3
4,123,204 - HP15_3892 0.89 +0.1

Or see this region's nucleotide sequence