Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3813 and HP15_3814 are separated by 221 nucleotides HP15_3814 and HP15_3815 overlap by 1 nucleotides HP15_3815 and HP15_3816 are separated by 0 nucleotides
HP15_3813: HP15_3813 - conserved hypothetical protein, at 4,038,900 to 4,039,433
_3813
HP15_3814: HP15_3814 - ExsB protein, at 4,039,655 to 4,040,284
_3814
HP15_3815: HP15_3815 - organic radical activating enzyme, at 4,040,284 to 4,040,940
_3815
HP15_3816: HP15_3816 - transcriptional regulator, AraC family protein, at 4,040,941 to 4,042,008
_3816
Position (kb)
4040
4041 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4039.323 kb on + strand, within HP15_3813 at 4039.323 kb on + strand, within HP15_3813 at 4039.331 kb on - strand, within HP15_3813 at 4039.366 kb on - strand, within HP15_3813 at 4039.390 kb on - strand at 4039.390 kb on - strand at 4039.397 kb on - strand at 4039.421 kb on + strand at 4039.521 kb on + strand at 4039.525 kb on - strand at 4039.652 kb on + strand at 4039.660 kb on + strand at 4039.660 kb on + strand at 4039.668 kb on - strand at 4039.668 kb on - strand at 4039.668 kb on - strand at 4039.695 kb on + strand at 4039.703 kb on + strand at 4039.760 kb on + strand, within HP15_3814 at 4039.770 kb on + strand, within HP15_3814 at 4039.788 kb on + strand, within HP15_3814 at 4039.885 kb on - strand, within HP15_3814 at 4040.075 kb on - strand, within HP15_3814 at 4040.114 kb on + strand, within HP15_3814 at 4040.144 kb on + strand, within HP15_3814 at 4040.156 kb on + strand, within HP15_3814 at 4040.169 kb on - strand, within HP15_3814 at 4040.300 kb on - strand at 4040.319 kb on + strand at 4040.327 kb on - strand at 4040.334 kb on + strand at 4040.342 kb on - strand at 4040.355 kb on - strand, within HP15_3815 at 4040.376 kb on + strand, within HP15_3815 at 4040.384 kb on - strand, within HP15_3815 at 4040.617 kb on - strand, within HP15_3815 at 4040.623 kb on - strand, within HP15_3815 at 4040.641 kb on - strand, within HP15_3815 at 4040.641 kb on - strand, within HP15_3815 at 4040.898 kb on + strand at 4040.908 kb on - strand at 4040.966 kb on + strand at 4040.974 kb on - strand at 4040.976 kb on + strand at 4040.976 kb on + strand at 4040.984 kb on - strand at 4041.093 kb on + strand, within HP15_3816 at 4041.104 kb on + strand, within HP15_3816 at 4041.197 kb on - strand, within HP15_3816 at 4041.222 kb on + strand, within HP15_3816 at 4041.222 kb on + strand, within HP15_3816 at 4041.335 kb on + strand, within HP15_3816 at 4041.485 kb on - strand, within HP15_3816 at 4041.556 kb on - strand, within HP15_3816 at 4041.595 kb on - strand, within HP15_3816 at 4041.651 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.739 kb on - strand, within HP15_3816 at 4041.739 kb on - strand, within HP15_3816 at 4041.777 kb on + strand, within HP15_3816 at 4041.813 kb on + strand, within HP15_3816 at 4041.817 kb on - strand, within HP15_3816 at 4041.849 kb on - strand, within HP15_3816 at 4041.849 kb on - strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.887 kb on + strand, within HP15_3816 at 4041.923 kb on + strand at 4041.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 4,039,323 + HP15_3813 0.79 -0.9 4,039,323 + HP15_3813 0.79 -0.7 4,039,331 - HP15_3813 0.81 -0.8 4,039,366 - HP15_3813 0.87 -0.2 4,039,390 - -0.7 4,039,390 - -0.1 4,039,397 - -0.4 4,039,421 + -1.3 4,039,521 + -1.7 4,039,525 - -0.1 4,039,652 + -1.0 4,039,660 + -0.1 4,039,660 + +1.0 4,039,668 - +0.0 4,039,668 - -0.2 4,039,668 - +1.9 4,039,695 + -0.9 4,039,703 + +1.3 4,039,760 + HP15_3814 0.17 -1.0 4,039,770 + HP15_3814 0.18 -1.0 4,039,788 + HP15_3814 0.21 +0.9 4,039,885 - HP15_3814 0.37 +0.0 4,040,075 - HP15_3814 0.67 -0.0 4,040,114 + HP15_3814 0.73 -1.3 4,040,144 + HP15_3814 0.78 -0.1 4,040,156 + HP15_3814 0.80 -0.7 4,040,169 - HP15_3814 0.82 -1.5 4,040,300 - -0.3 4,040,319 + -2.0 4,040,327 - -1.6 4,040,334 + +0.7 4,040,342 - +0.5 4,040,355 - HP15_3815 0.11 +0.7 4,040,376 + HP15_3815 0.14 +0.3 4,040,384 - HP15_3815 0.15 -0.8 4,040,617 - HP15_3815 0.51 -1.1 4,040,623 - HP15_3815 0.52 -0.2 4,040,641 - HP15_3815 0.54 +0.3 4,040,641 - HP15_3815 0.54 -1.0 4,040,898 + -0.9 4,040,908 - -0.2 4,040,966 + -0.3 4,040,974 - +0.2 4,040,976 + -1.3 4,040,976 + -0.1 4,040,984 - -0.3 4,041,093 + HP15_3816 0.14 -0.4 4,041,104 + HP15_3816 0.15 +1.3 4,041,197 - HP15_3816 0.24 +0.4 4,041,222 + HP15_3816 0.26 +0.3 4,041,222 + HP15_3816 0.26 +0.2 4,041,335 + HP15_3816 0.37 +0.2 4,041,485 - HP15_3816 0.51 -1.9 4,041,556 - HP15_3816 0.58 +1.1 4,041,595 - HP15_3816 0.61 -0.1 4,041,651 + HP15_3816 0.66 -1.5 4,041,711 + HP15_3816 0.72 +0.6 4,041,711 + HP15_3816 0.72 +0.6 4,041,711 + HP15_3816 0.72 -0.1 4,041,711 + HP15_3816 0.72 -1.3 4,041,719 - HP15_3816 0.73 -0.8 4,041,719 - HP15_3816 0.73 +0.1 4,041,719 - HP15_3816 0.73 +0.7 4,041,719 - HP15_3816 0.73 +0.3 4,041,739 - HP15_3816 0.75 -0.4 4,041,739 - HP15_3816 0.75 -0.5 4,041,777 + HP15_3816 0.78 -0.7 4,041,813 + HP15_3816 0.82 +0.5 4,041,817 - HP15_3816 0.82 +0.8 4,041,849 - HP15_3816 0.85 -0.2 4,041,849 - HP15_3816 0.85 -2.5 4,041,882 + HP15_3816 0.88 -0.9 4,041,882 + HP15_3816 0.88 -0.2 4,041,882 + HP15_3816 0.88 +0.1 4,041,882 + HP15_3816 0.88 +0.7 4,041,887 + HP15_3816 0.89 +0.1 4,041,923 + +1.3 4,041,929 + -0.7
Or see this region's nucleotide sequence