Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3179 and HP15_3180 are separated by 157 nucleotides HP15_3180 and HP15_3181 overlap by 8 nucleotides HP15_3181 and HP15_3182 are separated by 59 nucleotides
HP15_3179: HP15_3179 - protein containing DUF1826, at 3,333,187 to 3,333,822
_3179
HP15_3180: HP15_3180 - ABC transporter, ATP-binding protein, at 3,333,980 to 3,334,651
_3180
HP15_3181: HP15_3181 - binding-protein-dependent transport systems inner membrane component, at 3,334,644 to 3,335,357
_3181
HP15_3182: HP15_3182 - ABC transporter substrate-binding protein, at 3,335,417 to 3,336,370
_3182
Position (kb)
3334
3335
3336 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3333.703 kb on - strand, within HP15_3179 at 3333.729 kb on + strand, within HP15_3179 at 3333.851 kb on + strand at 3333.859 kb on - strand at 3333.859 kb on - strand at 3334.002 kb on - strand at 3334.016 kb on - strand at 3334.040 kb on - strand at 3334.122 kb on + strand, within HP15_3180 at 3334.137 kb on + strand, within HP15_3180 at 3334.282 kb on - strand, within HP15_3180 at 3334.342 kb on + strand, within HP15_3180 at 3334.342 kb on + strand, within HP15_3180 at 3334.363 kb on + strand, within HP15_3180 at 3334.391 kb on - strand, within HP15_3180 at 3334.573 kb on - strand, within HP15_3180 at 3334.642 kb on + strand at 3334.755 kb on - strand, within HP15_3181 at 3334.837 kb on - strand, within HP15_3181 at 3334.859 kb on + strand, within HP15_3181 at 3334.859 kb on + strand, within HP15_3181 at 3334.867 kb on - strand, within HP15_3181 at 3334.872 kb on - strand, within HP15_3181 at 3334.882 kb on + strand, within HP15_3181 at 3334.925 kb on + strand, within HP15_3181 at 3334.933 kb on - strand, within HP15_3181 at 3335.022 kb on - strand, within HP15_3181 at 3335.056 kb on + strand, within HP15_3181 at 3335.105 kb on - strand, within HP15_3181 at 3335.174 kb on - strand, within HP15_3181 at 3335.202 kb on + strand, within HP15_3181 at 3335.207 kb on + strand, within HP15_3181 at 3335.229 kb on + strand, within HP15_3181 at 3335.229 kb on + strand, within HP15_3181 at 3335.229 kb on + strand, within HP15_3181 at 3335.229 kb on + strand, within HP15_3181 at 3335.237 kb on - strand, within HP15_3181 at 3335.237 kb on - strand, within HP15_3181 at 3335.237 kb on - strand, within HP15_3181 at 3335.237 kb on - strand, within HP15_3181 at 3335.237 kb on - strand, within HP15_3181 at 3335.242 kb on - strand, within HP15_3181 at 3335.365 kb on - strand at 3335.372 kb on + strand at 3335.512 kb on + strand at 3335.520 kb on - strand, within HP15_3182 at 3335.559 kb on + strand, within HP15_3182 at 3335.588 kb on - strand, within HP15_3182 at 3335.602 kb on + strand, within HP15_3182 at 3335.637 kb on + strand, within HP15_3182 at 3335.637 kb on + strand, within HP15_3182 at 3335.645 kb on - strand, within HP15_3182 at 3335.645 kb on - strand, within HP15_3182 at 3335.647 kb on + strand, within HP15_3182 at 3335.647 kb on + strand, within HP15_3182 at 3335.655 kb on - strand, within HP15_3182 at 3335.712 kb on + strand, within HP15_3182 at 3335.916 kb on - strand, within HP15_3182 at 3335.959 kb on - strand, within HP15_3182 at 3335.966 kb on - strand, within HP15_3182 at 3336.043 kb on + strand, within HP15_3182 at 3336.099 kb on + strand, within HP15_3182 at 3336.099 kb on + strand, within HP15_3182 at 3336.107 kb on - strand, within HP15_3182 at 3336.140 kb on - strand, within HP15_3182 at 3336.272 kb on - strand, within HP15_3182 at 3336.280 kb on - strand at 3336.282 kb on + strand at 3336.301 kb on + strand at 3336.301 kb on + strand at 3336.309 kb on - strand at 3336.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 3,333,703 - HP15_3179 0.81 -0.1 3,333,729 + HP15_3179 0.85 -1.1 3,333,851 + -0.4 3,333,859 - -0.5 3,333,859 - +0.9 3,334,002 - +0.3 3,334,016 - +0.5 3,334,040 - +0.2 3,334,122 + HP15_3180 0.21 -1.2 3,334,137 + HP15_3180 0.23 -1.1 3,334,282 - HP15_3180 0.45 -0.7 3,334,342 + HP15_3180 0.54 -0.3 3,334,342 + HP15_3180 0.54 -0.1 3,334,363 + HP15_3180 0.57 +0.3 3,334,391 - HP15_3180 0.61 +0.6 3,334,573 - HP15_3180 0.88 +0.8 3,334,642 + -0.9 3,334,755 - HP15_3181 0.16 +0.3 3,334,837 - HP15_3181 0.27 -0.8 3,334,859 + HP15_3181 0.30 +0.7 3,334,859 + HP15_3181 0.30 -1.7 3,334,867 - HP15_3181 0.31 +0.3 3,334,872 - HP15_3181 0.32 -0.7 3,334,882 + HP15_3181 0.33 -1.1 3,334,925 + HP15_3181 0.39 -1.2 3,334,933 - HP15_3181 0.40 -2.5 3,335,022 - HP15_3181 0.53 +0.1 3,335,056 + HP15_3181 0.58 +0.8 3,335,105 - HP15_3181 0.65 -0.3 3,335,174 - HP15_3181 0.74 -0.3 3,335,202 + HP15_3181 0.78 -0.8 3,335,207 + HP15_3181 0.79 +0.8 3,335,229 + HP15_3181 0.82 -0.3 3,335,229 + HP15_3181 0.82 -0.4 3,335,229 + HP15_3181 0.82 -0.6 3,335,229 + HP15_3181 0.82 -0.7 3,335,237 - HP15_3181 0.83 +1.7 3,335,237 - HP15_3181 0.83 -0.6 3,335,237 - HP15_3181 0.83 +0.5 3,335,237 - HP15_3181 0.83 +0.3 3,335,237 - HP15_3181 0.83 -0.5 3,335,242 - HP15_3181 0.84 -0.4 3,335,365 - +0.1 3,335,372 + -0.6 3,335,512 + -1.2 3,335,520 - HP15_3182 0.11 -0.1 3,335,559 + HP15_3182 0.15 +0.5 3,335,588 - HP15_3182 0.18 +0.2 3,335,602 + HP15_3182 0.19 +1.7 3,335,637 + HP15_3182 0.23 -0.1 3,335,637 + HP15_3182 0.23 +0.3 3,335,645 - HP15_3182 0.24 +0.0 3,335,645 - HP15_3182 0.24 +0.3 3,335,647 + HP15_3182 0.24 -1.2 3,335,647 + HP15_3182 0.24 +0.9 3,335,655 - HP15_3182 0.25 +0.9 3,335,712 + HP15_3182 0.31 +0.3 3,335,916 - HP15_3182 0.52 +1.7 3,335,959 - HP15_3182 0.57 +1.7 3,335,966 - HP15_3182 0.58 +0.1 3,336,043 + HP15_3182 0.66 +0.5 3,336,099 + HP15_3182 0.71 -0.4 3,336,099 + HP15_3182 0.71 +0.1 3,336,107 - HP15_3182 0.72 -0.2 3,336,140 - HP15_3182 0.76 +0.7 3,336,272 - HP15_3182 0.90 -0.7 3,336,280 - +0.3 3,336,282 + -0.5 3,336,301 + +0.1 3,336,301 + +2.3 3,336,309 - +0.7 3,336,309 - +1.1
Or see this region's nucleotide sequence