Strain Fitness in Marinobacter adhaerens HP15 around HP15_2982

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2981 and HP15_2982 are separated by 6 nucleotidesHP15_2982 and HP15_2983 are separated by 86 nucleotides HP15_2981: HP15_2981 - 3-oxoacyl-(acyl-carrier-protein) synthase I, at 3,123,898 to 3,125,109 _2981 HP15_2982: HP15_2982 - protein containing Helix-turn-helix, AraC domain, at 3,125,116 to 3,125,472 _2982 HP15_2983: HP15_2983 - peptidase, U32 family, at 3,125,559 to 3,126,956 _2983 Position (kb) 3125 3126Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3124.142 kb on - strand, within HP15_2981at 3124.173 kb on + strand, within HP15_2981at 3124.377 kb on - strand, within HP15_2981at 3124.738 kb on - strand, within HP15_2981at 3124.790 kb on + strand, within HP15_2981at 3125.077 kb on + strandat 3125.126 kb on - strandat 3125.132 kb on - strandat 3125.240 kb on - strand, within HP15_2982at 3125.254 kb on + strand, within HP15_2982at 3125.333 kb on + strand, within HP15_2982at 3125.394 kb on + strand, within HP15_2982at 3125.399 kb on + strand, within HP15_2982at 3125.404 kb on + strand, within HP15_2982at 3125.445 kb on + strandat 3125.471 kb on + strandat 3125.588 kb on - strandat 3125.628 kb on + strandat 3125.638 kb on + strandat 3125.638 kb on + strandat 3125.638 kb on + strandat 3125.638 kb on + strandat 3125.638 kb on + strandat 3125.638 kb on + strandat 3125.638 kb on + strandat 3125.646 kb on - strandat 3125.646 kb on - strandat 3125.646 kb on - strandat 3125.646 kb on - strandat 3125.646 kb on - strandat 3125.665 kb on + strandat 3125.673 kb on - strandat 3125.675 kb on + strandat 3125.683 kb on - strandat 3125.683 kb on - strandat 3125.683 kb on - strandat 3125.685 kb on + strandat 3125.713 kb on + strand, within HP15_2983at 3125.816 kb on + strand, within HP15_2983at 3125.824 kb on - strand, within HP15_2983at 3125.824 kb on - strand, within HP15_2983at 3125.860 kb on + strand, within HP15_2983at 3125.990 kb on - strand, within HP15_2983at 3126.018 kb on - strand, within HP15_2983at 3126.148 kb on - strand, within HP15_2983at 3126.148 kb on - strand, within HP15_2983at 3126.250 kb on - strand, within HP15_2983at 3126.253 kb on + strand, within HP15_2983at 3126.261 kb on - strand, within HP15_2983at 3126.261 kb on - strand, within HP15_2983at 3126.308 kb on - strand, within HP15_2983at 3126.375 kb on + strand, within HP15_2983

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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3,124,142 - HP15_2981 0.20 +2.1
3,124,173 + HP15_2981 0.23 +2.1
3,124,377 - HP15_2981 0.40 +3.0
3,124,738 - HP15_2981 0.69 +3.8
3,124,790 + HP15_2981 0.74 +4.0
3,125,077 + +3.1
3,125,126 - +0.3
3,125,132 - -0.6
3,125,240 - HP15_2982 0.35 +2.2
3,125,254 + HP15_2982 0.39 +2.4
3,125,333 + HP15_2982 0.61 +2.9
3,125,394 + HP15_2982 0.78 +0.1
3,125,399 + HP15_2982 0.79 +0.6
3,125,404 + HP15_2982 0.81 +1.7
3,125,445 + +0.3
3,125,471 + +1.9
3,125,588 - -0.2
3,125,628 + +1.0
3,125,638 + +0.1
3,125,638 + +1.4
3,125,638 + +1.3
3,125,638 + +0.2
3,125,638 + -0.2
3,125,638 + +0.1
3,125,638 + +0.2
3,125,646 - +0.9
3,125,646 - -0.3
3,125,646 - +0.4
3,125,646 - -1.9
3,125,646 - -1.5
3,125,665 + +0.2
3,125,673 - -0.7
3,125,675 + -0.3
3,125,683 - +0.7
3,125,683 - -1.8
3,125,683 - -0.7
3,125,685 + +0.2
3,125,713 + HP15_2983 0.11 +0.9
3,125,816 + HP15_2983 0.18 -1.2
3,125,824 - HP15_2983 0.19 +0.6
3,125,824 - HP15_2983 0.19 +1.3
3,125,860 + HP15_2983 0.22 -0.2
3,125,990 - HP15_2983 0.31 +1.3
3,126,018 - HP15_2983 0.33 +3.9
3,126,148 - HP15_2983 0.42 -0.3
3,126,148 - HP15_2983 0.42 +0.6
3,126,250 - HP15_2983 0.49 +0.1
3,126,253 + HP15_2983 0.50 -1.3
3,126,261 - HP15_2983 0.50 -0.7
3,126,261 - HP15_2983 0.50 +0.9
3,126,308 - HP15_2983 0.54 +0.4
3,126,375 + HP15_2983 0.58 +0.1

Or see this region's nucleotide sequence