Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2936 and HP15_2937 overlap by 4 nucleotides HP15_2937 and HP15_2938 overlap by 4 nucleotides HP15_2938 and HP15_2939 are separated by 156 nucleotides
HP15_2936: HP15_2936 - periplasmic sensor signal transduction histidine kinase, at 3,078,059 to 3,079,396
_2936
HP15_2937: HP15_2937 - two component transcriptional regulator, winged helix family, at 3,079,393 to 3,080,064
_2937
HP15_2938: HP15_2938 - propeptide, PepSY amd peptidase M4, at 3,080,061 to 3,080,432
_2938
HP15_2939: HP15_2939 - conserved hypothetical protein, secreted, at 3,080,589 to 3,081,059
_2939
Position (kb)
3079
3080
3081 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3078.428 kb on - strand, within HP15_2936 at 3078.557 kb on + strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3079.023 kb on - strand, within HP15_2936 at 3079.045 kb on + strand, within HP15_2936 at 3079.204 kb on + strand, within HP15_2936 at 3079.237 kb on + strand, within HP15_2936 at 3079.268 kb on + strand at 3079.421 kb on + strand at 3079.523 kb on + strand, within HP15_2937 at 3079.578 kb on + strand, within HP15_2937 at 3079.650 kb on - strand, within HP15_2937 at 3079.704 kb on - strand, within HP15_2937 at 3079.814 kb on - strand, within HP15_2937 at 3079.871 kb on + strand, within HP15_2937 at 3080.312 kb on - strand, within HP15_2938 at 3080.442 kb on - strand at 3080.487 kb on + strand at 3080.572 kb on + strand at 3080.673 kb on + strand, within HP15_2939 at 3080.714 kb on + strand, within HP15_2939 at 3080.796 kb on - strand, within HP15_2939 at 3080.832 kb on - strand, within HP15_2939 at 3080.923 kb on + strand, within HP15_2939 at 3080.923 kb on + strand, within HP15_2939 at 3080.971 kb on + strand, within HP15_2939 at 3080.971 kb on + strand, within HP15_2939 at 3080.979 kb on - strand, within HP15_2939 at 3081.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 3,078,428 - HP15_2936 0.28 +0.7 3,078,557 + HP15_2936 0.37 +0.2 3,078,873 - HP15_2936 0.61 -0.3 3,078,873 - HP15_2936 0.61 -1.5 3,079,023 - HP15_2936 0.72 -0.6 3,079,045 + HP15_2936 0.74 -2.1 3,079,204 + HP15_2936 0.86 +0.4 3,079,237 + HP15_2936 0.88 -0.7 3,079,268 + -0.4 3,079,421 + -1.1 3,079,523 + HP15_2937 0.19 +1.5 3,079,578 + HP15_2937 0.28 +0.8 3,079,650 - HP15_2937 0.38 -1.5 3,079,704 - HP15_2937 0.46 +0.1 3,079,814 - HP15_2937 0.63 -0.2 3,079,871 + HP15_2937 0.71 +0.9 3,080,312 - HP15_2938 0.67 -3.1 3,080,442 - -1.0 3,080,487 + -1.1 3,080,572 + -0.3 3,080,673 + HP15_2939 0.18 +0.5 3,080,714 + HP15_2939 0.27 +1.3 3,080,796 - HP15_2939 0.44 -1.1 3,080,832 - HP15_2939 0.52 -0.2 3,080,923 + HP15_2939 0.71 -0.1 3,080,923 + HP15_2939 0.71 -0.3 3,080,971 + HP15_2939 0.81 +0.5 3,080,971 + HP15_2939 0.81 -1.6 3,080,979 - HP15_2939 0.83 +0.3 3,081,037 - +0.5
Or see this region's nucleotide sequence