Strain Fitness in Marinobacter adhaerens HP15 around HP15_2625

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2624 and HP15_2625 are separated by 7 nucleotidesHP15_2625 and HP15_2626 are separated by 15 nucleotidesHP15_2626 and HP15_2627 are separated by 4 nucleotides HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687 _2624 HP15_2625: HP15_2625 - silent information regulator protein Sir2, at 2,776,695 to 2,777,597 _2625 HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344 _2626 HP15_2627: HP15_2627 - protein containing DUF1415, at 2,778,349 to 2,778,909 _2627 Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2775.785 kb on + strand, within HP15_2624at 2775.872 kb on - strand, within HP15_2624at 2775.930 kb on - strand, within HP15_2624at 2775.995 kb on - strand, within HP15_2624at 2776.021 kb on - strand, within HP15_2624at 2776.103 kb on - strand, within HP15_2624at 2776.126 kb on + strand, within HP15_2624at 2776.167 kb on + strand, within HP15_2624at 2776.175 kb on - strand, within HP15_2624at 2776.268 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.351 kb on - strand, within HP15_2624at 2776.351 kb on - strand, within HP15_2624at 2776.391 kb on + strand, within HP15_2624at 2776.391 kb on + strand, within HP15_2624at 2776.519 kb on + strand, within HP15_2624at 2776.591 kb on + strandat 2776.637 kb on - strandat 2776.664 kb on + strandat 2776.701 kb on - strandat 2776.907 kb on - strand, within HP15_2625at 2777.073 kb on + strand, within HP15_2625at 2777.073 kb on + strand, within HP15_2625at 2777.073 kb on + strand, within HP15_2625at 2777.081 kb on - strand, within HP15_2625at 2777.139 kb on - strand, within HP15_2625at 2777.171 kb on + strand, within HP15_2625at 2777.227 kb on - strand, within HP15_2625at 2777.241 kb on - strand, within HP15_2625at 2777.273 kb on + strand, within HP15_2625at 2777.297 kb on - strand, within HP15_2625at 2777.359 kb on + strand, within HP15_2625at 2777.431 kb on + strand, within HP15_2625at 2777.438 kb on + strand, within HP15_2625at 2777.439 kb on - strand, within HP15_2625at 2777.446 kb on - strand, within HP15_2625at 2777.703 kb on + strand, within HP15_2626at 2777.703 kb on + strand, within HP15_2626at 2777.714 kb on - strand, within HP15_2626at 2778.106 kb on + strand, within HP15_2626at 2778.111 kb on + strand, within HP15_2626at 2778.165 kb on - strand, within HP15_2626at 2778.345 kb on - strandat 2778.347 kb on + strandat 2778.347 kb on + strandat 2778.347 kb on + strandat 2778.355 kb on - strandat 2778.355 kb on - strandat 2778.392 kb on - strandat 2778.434 kb on - strand, within HP15_2627

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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2,775,785 + HP15_2624 0.36 +0.4
2,775,872 - HP15_2624 0.42 +0.1
2,775,930 - HP15_2624 0.46 -0.6
2,775,995 - HP15_2624 0.51 -0.4
2,776,021 - HP15_2624 0.53 -1.9
2,776,103 - HP15_2624 0.59 +2.0
2,776,126 + HP15_2624 0.60 -0.6
2,776,167 + HP15_2624 0.63 +2.0
2,776,175 - HP15_2624 0.64 -0.6
2,776,268 + HP15_2624 0.70 -0.2
2,776,326 + HP15_2624 0.74 +1.0
2,776,326 + HP15_2624 0.74 -0.5
2,776,326 + HP15_2624 0.74 -0.0
2,776,326 + HP15_2624 0.74 -0.3
2,776,351 - HP15_2624 0.76 -0.0
2,776,351 - HP15_2624 0.76 +0.3
2,776,391 + HP15_2624 0.79 -1.8
2,776,391 + HP15_2624 0.79 -1.1
2,776,519 + HP15_2624 0.88 -1.9
2,776,591 + -0.3
2,776,637 - -0.2
2,776,664 + -0.4
2,776,701 - +0.3
2,776,907 - HP15_2625 0.23 -0.3
2,777,073 + HP15_2625 0.42 +0.8
2,777,073 + HP15_2625 0.42 +1.0
2,777,073 + HP15_2625 0.42 +0.3
2,777,081 - HP15_2625 0.43 +0.6
2,777,139 - HP15_2625 0.49 -3.0
2,777,171 + HP15_2625 0.53 +0.0
2,777,227 - HP15_2625 0.59 +0.6
2,777,241 - HP15_2625 0.60 -0.1
2,777,273 + HP15_2625 0.64 +0.3
2,777,297 - HP15_2625 0.67 +1.0
2,777,359 + HP15_2625 0.74 +0.4
2,777,431 + HP15_2625 0.82 +1.2
2,777,438 + HP15_2625 0.82 -0.6
2,777,439 - HP15_2625 0.82 +0.2
2,777,446 - HP15_2625 0.83 +0.3
2,777,703 + HP15_2626 0.12 +1.2
2,777,703 + HP15_2626 0.12 -0.4
2,777,714 - HP15_2626 0.14 +0.1
2,778,106 + HP15_2626 0.67 +0.1
2,778,111 + HP15_2626 0.68 +0.5
2,778,165 - HP15_2626 0.75 +0.1
2,778,345 - +1.5
2,778,347 + -0.6
2,778,347 + -0.4
2,778,347 + -0.6
2,778,355 - +0.6
2,778,355 - +0.5
2,778,392 - -0.8
2,778,434 - HP15_2627 0.15 -0.4

Or see this region's nucleotide sequence