Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2592 and HP15_2593 overlap by 8 nucleotides HP15_2593 and HP15_2594 are separated by 70 nucleotides HP15_2594 and HP15_2595 are separated by 187 nucleotides HP15_2595 and HP15_2596 are separated by 20 nucleotides HP15_2596 and HP15_2597 are separated by 76 nucleotides
HP15_2592: HP15_2592 - multiple resistance and pH regulation protein F, at 2,741,730 to 2,742,002
_2592
HP15_2593: HP15_2593 - monovalent cation/proton antiporter, MnhG/PhaG subunit, at 2,741,995 to 2,742,402
_2593
HP15_2594: HP15_2594 - hypothetical protein, at 2,742,473 to 2,742,754
_2594
HP15_2595: HP15_2595 - acyl-CoA synthetase, at 2,742,942 to 2,744,585
_2595
HP15_2596: HP15_2596 - endoribonuclease L-PSP, at 2,744,606 to 2,744,923
_2596
HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904
_2597
Position (kb)
2742
2743
2744
2745 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2742.151 kb on + strand, within HP15_2593 at 2742.159 kb on - strand, within HP15_2593 at 2742.334 kb on - strand, within HP15_2593 at 2742.359 kb on - strand, within HP15_2593 at 2742.395 kb on - strand at 2742.460 kb on - strand at 2742.508 kb on - strand, within HP15_2594 at 2742.526 kb on + strand, within HP15_2594 at 2742.528 kb on + strand, within HP15_2594 at 2742.554 kb on - strand, within HP15_2594 at 2742.621 kb on + strand, within HP15_2594 at 2742.637 kb on - strand, within HP15_2594 at 2742.642 kb on + strand, within HP15_2594 at 2742.729 kb on + strand at 2742.731 kb on + strand at 2742.731 kb on + strand at 2742.731 kb on + strand at 2742.744 kb on + strand at 2742.937 kb on - strand at 2743.188 kb on + strand, within HP15_2595 at 2743.274 kb on + strand, within HP15_2595 at 2743.407 kb on + strand, within HP15_2595 at 2743.533 kb on + strand, within HP15_2595 at 2743.588 kb on + strand, within HP15_2595 at 2743.615 kb on - strand, within HP15_2595 at 2743.675 kb on - strand, within HP15_2595 at 2743.712 kb on + strand, within HP15_2595 at 2743.712 kb on + strand, within HP15_2595 at 2743.727 kb on + strand, within HP15_2595 at 2743.865 kb on - strand, within HP15_2595 at 2743.890 kb on - strand, within HP15_2595 at 2743.944 kb on + strand, within HP15_2595 at 2743.952 kb on - strand, within HP15_2595 at 2743.998 kb on - strand, within HP15_2595 at 2744.075 kb on + strand, within HP15_2595 at 2744.116 kb on - strand, within HP15_2595 at 2744.134 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.234 kb on + strand, within HP15_2595 at 2744.338 kb on - strand, within HP15_2595 at 2744.397 kb on + strand, within HP15_2595 at 2744.407 kb on + strand, within HP15_2595 at 2744.415 kb on - strand, within HP15_2595 at 2744.421 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.434 kb on - strand at 2744.439 kb on - strand at 2744.450 kb on - strand at 2744.612 kb on - strand at 2744.661 kb on - strand, within HP15_2596 at 2744.688 kb on + strand, within HP15_2596 at 2744.791 kb on + strand, within HP15_2596 at 2744.879 kb on - strand, within HP15_2596 at 2745.023 kb on - strand at 2745.115 kb on + strand at 2745.168 kb on - strand at 2745.168 kb on - strand at 2745.203 kb on - strand, within HP15_2597 at 2745.277 kb on + strand, within HP15_2597 at 2745.399 kb on - strand, within HP15_2597 at 2745.424 kb on - strand, within HP15_2597 at 2745.516 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 2,742,151 + HP15_2593 0.38 +1.2 2,742,159 - HP15_2593 0.40 -1.5 2,742,334 - HP15_2593 0.83 -0.3 2,742,359 - HP15_2593 0.89 +0.3 2,742,395 - -1.2 2,742,460 - +1.2 2,742,508 - HP15_2594 0.12 -0.0 2,742,526 + HP15_2594 0.19 -0.1 2,742,528 + HP15_2594 0.20 +0.2 2,742,554 - HP15_2594 0.29 +3.2 2,742,621 + HP15_2594 0.52 +0.1 2,742,637 - HP15_2594 0.58 -3.3 2,742,642 + HP15_2594 0.60 +2.2 2,742,729 + -1.2 2,742,731 + +0.8 2,742,731 + +0.2 2,742,731 + -0.5 2,742,744 + -1.2 2,742,937 - +1.8 2,743,188 + HP15_2595 0.15 +0.6 2,743,274 + HP15_2595 0.20 +0.2 2,743,407 + HP15_2595 0.28 -1.4 2,743,533 + HP15_2595 0.36 +1.5 2,743,588 + HP15_2595 0.39 -0.1 2,743,615 - HP15_2595 0.41 +0.4 2,743,675 - HP15_2595 0.45 -0.8 2,743,712 + HP15_2595 0.47 -0.9 2,743,712 + HP15_2595 0.47 +3.8 2,743,727 + HP15_2595 0.48 +0.4 2,743,865 - HP15_2595 0.56 +0.9 2,743,890 - HP15_2595 0.58 -2.0 2,743,944 + HP15_2595 0.61 -0.2 2,743,952 - HP15_2595 0.61 +0.2 2,743,998 - HP15_2595 0.64 +2.2 2,744,075 + HP15_2595 0.69 +1.2 2,744,116 - HP15_2595 0.71 -1.9 2,744,134 + HP15_2595 0.73 -0.4 2,744,183 + HP15_2595 0.75 +0.3 2,744,183 + HP15_2595 0.75 +0.5 2,744,234 + HP15_2595 0.79 +1.2 2,744,338 - HP15_2595 0.85 +1.6 2,744,397 + HP15_2595 0.89 -1.1 2,744,407 + HP15_2595 0.89 +0.1 2,744,415 - HP15_2595 0.90 -0.2 2,744,421 + +1.2 2,744,431 + +0.2 2,744,431 + -0.1 2,744,431 + -0.4 2,744,434 - +1.3 2,744,439 - -0.4 2,744,450 - -2.2 2,744,612 - +1.2 2,744,661 - HP15_2596 0.17 +0.7 2,744,688 + HP15_2596 0.26 -2.0 2,744,791 + HP15_2596 0.58 -0.3 2,744,879 - HP15_2596 0.86 -0.4 2,745,023 - -0.1 2,745,115 + -1.7 2,745,168 - +0.8 2,745,168 - -2.4 2,745,203 - HP15_2597 0.11 +0.2 2,745,277 + HP15_2597 0.15 -1.4 2,745,399 - HP15_2597 0.21 -0.3 2,745,424 - HP15_2597 0.22 +2.6 2,745,516 + HP15_2597 0.27 +0.3 2,745,526 + HP15_2597 0.28 -0.0 2,745,526 + HP15_2597 0.28 +0.5
Or see this region's nucleotide sequence