Strain Fitness in Marinobacter adhaerens HP15 around HP15_2450

Experiment: m.b. methylglyoxal 0.008 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2448 and HP15_2449 are separated by 9 nucleotidesHP15_2449 and HP15_2450 are separated by 30 nucleotidesHP15_2450 and HP15_2451 are separated by 40 nucleotides HP15_2448: HP15_2448 - protein belonging to uncharacterized protein family UPF0307, at 2,585,059 to 2,585,586 _2448 HP15_2449: HP15_2449 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 2,585,596 to 2,586,441 _2449 HP15_2450: HP15_2450 - conserved hypothetical protein, at 2,586,472 to 2,590,227 _2450 HP15_2451: HP15_2451 - ribonuclease, Rne/Rng family, at 2,590,268 to 2,591,749 _2451 Position (kb) 2586 2587 2588 2589 2590 2591Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2585.549 kb on + strandat 2585.579 kb on - strandat 2585.685 kb on - strand, within HP15_2449at 2585.690 kb on - strand, within HP15_2449at 2585.723 kb on - strand, within HP15_2449at 2585.790 kb on + strand, within HP15_2449at 2585.880 kb on + strand, within HP15_2449at 2585.930 kb on - strand, within HP15_2449at 2586.130 kb on - strand, within HP15_2449at 2586.141 kb on + strand, within HP15_2449at 2586.149 kb on - strand, within HP15_2449at 2586.240 kb on + strand, within HP15_2449at 2586.631 kb on - strandat 2586.764 kb on - strandat 2586.835 kb on - strandat 2586.872 kb on + strand, within HP15_2450at 2586.938 kb on + strand, within HP15_2450at 2586.938 kb on + strand, within HP15_2450at 2587.035 kb on + strand, within HP15_2450at 2587.222 kb on - strand, within HP15_2450at 2587.363 kb on + strand, within HP15_2450at 2587.663 kb on + strand, within HP15_2450at 2587.688 kb on + strand, within HP15_2450at 2587.731 kb on - strand, within HP15_2450at 2587.733 kb on - strand, within HP15_2450at 2587.733 kb on - strand, within HP15_2450at 2587.774 kb on + strand, within HP15_2450at 2587.939 kb on + strand, within HP15_2450at 2588.053 kb on - strand, within HP15_2450at 2588.157 kb on - strand, within HP15_2450at 2588.249 kb on - strand, within HP15_2450at 2588.254 kb on + strand, within HP15_2450at 2588.316 kb on - strand, within HP15_2450at 2588.352 kb on + strand, within HP15_2450at 2588.372 kb on + strand, within HP15_2450at 2588.372 kb on + strand, within HP15_2450at 2588.372 kb on + strand, within HP15_2450at 2588.380 kb on - strand, within HP15_2450at 2588.380 kb on - strand, within HP15_2450at 2588.460 kb on + strand, within HP15_2450at 2588.463 kb on - strand, within HP15_2450at 2588.471 kb on + strand, within HP15_2450at 2588.566 kb on - strand, within HP15_2450at 2588.637 kb on - strand, within HP15_2450at 2589.334 kb on + strand, within HP15_2450at 2589.342 kb on - strand, within HP15_2450at 2589.482 kb on + strand, within HP15_2450at 2589.484 kb on + strand, within HP15_2450at 2589.557 kb on + strand, within HP15_2450at 2589.557 kb on + strand, within HP15_2450at 2589.668 kb on + strand, within HP15_2450at 2589.813 kb on + strand, within HP15_2450at 2589.813 kb on + strand, within HP15_2450at 2589.866 kb on - strandat 2589.876 kb on - strandat 2590.243 kb on - strandat 2590.279 kb on - strandat 2590.284 kb on - strandat 2590.421 kb on + strand, within HP15_2451at 2590.537 kb on + strand, within HP15_2451at 2590.850 kb on - strand, within HP15_2451at 2590.903 kb on - strand, within HP15_2451at 2591.166 kb on - strand, within HP15_2451

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
remove
2,585,549 + +0.2
2,585,579 - +0.1
2,585,685 - HP15_2449 0.11 +0.2
2,585,690 - HP15_2449 0.11 +0.8
2,585,723 - HP15_2449 0.15 +0.0
2,585,790 + HP15_2449 0.23 +2.1
2,585,880 + HP15_2449 0.34 -0.5
2,585,930 - HP15_2449 0.39 +0.2
2,586,130 - HP15_2449 0.63 -0.1
2,586,141 + HP15_2449 0.64 +0.1
2,586,149 - HP15_2449 0.65 -2.1
2,586,240 + HP15_2449 0.76 -1.5
2,586,631 - +0.9
2,586,764 - +0.9
2,586,835 - -1.3
2,586,872 + HP15_2450 0.11 +1.4
2,586,938 + HP15_2450 0.12 +2.2
2,586,938 + HP15_2450 0.12 -0.5
2,587,035 + HP15_2450 0.15 +2.2
2,587,222 - HP15_2450 0.20 +0.4
2,587,363 + HP15_2450 0.24 +1.1
2,587,663 + HP15_2450 0.32 +2.8
2,587,688 + HP15_2450 0.32 -0.4
2,587,731 - HP15_2450 0.34 +0.1
2,587,733 - HP15_2450 0.34 +1.4
2,587,733 - HP15_2450 0.34 +0.3
2,587,774 + HP15_2450 0.35 +0.3
2,587,939 + HP15_2450 0.39 -0.3
2,588,053 - HP15_2450 0.42 +1.2
2,588,157 - HP15_2450 0.45 +1.8
2,588,249 - HP15_2450 0.47 -0.5
2,588,254 + HP15_2450 0.47 +1.2
2,588,316 - HP15_2450 0.49 +0.5
2,588,352 + HP15_2450 0.50 -1.1
2,588,372 + HP15_2450 0.51 +2.2
2,588,372 + HP15_2450 0.51 -0.1
2,588,372 + HP15_2450 0.51 +0.5
2,588,380 - HP15_2450 0.51 +0.4
2,588,380 - HP15_2450 0.51 -0.4
2,588,460 + HP15_2450 0.53 -1.3
2,588,463 - HP15_2450 0.53 +0.9
2,588,471 + HP15_2450 0.53 +0.8
2,588,566 - HP15_2450 0.56 +2.8
2,588,637 - HP15_2450 0.58 +0.1
2,589,334 + HP15_2450 0.76 +2.7
2,589,342 - HP15_2450 0.76 +0.5
2,589,482 + HP15_2450 0.80 +0.6
2,589,484 + HP15_2450 0.80 +1.1
2,589,557 + HP15_2450 0.82 +1.0
2,589,557 + HP15_2450 0.82 -0.4
2,589,668 + HP15_2450 0.85 +1.0
2,589,813 + HP15_2450 0.89 +0.7
2,589,813 + HP15_2450 0.89 +0.9
2,589,866 - -0.9
2,589,876 - -1.9
2,590,243 - +0.5
2,590,279 - +0.4
2,590,284 - +0.9
2,590,421 + HP15_2451 0.10 +0.7
2,590,537 + HP15_2451 0.18 +1.2
2,590,850 - HP15_2451 0.39 -0.3
2,590,903 - HP15_2451 0.43 +0.4
2,591,166 - HP15_2451 0.61 -1.8

Or see this region's nucleotide sequence