Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2448 and HP15_2449 are separated by 9 nucleotides HP15_2449 and HP15_2450 are separated by 30 nucleotides HP15_2450 and HP15_2451 are separated by 40 nucleotides
HP15_2448: HP15_2448 - protein belonging to uncharacterized protein family UPF0307, at 2,585,059 to 2,585,586
_2448
HP15_2449: HP15_2449 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 2,585,596 to 2,586,441
_2449
HP15_2450: HP15_2450 - conserved hypothetical protein, at 2,586,472 to 2,590,227
_2450
HP15_2451: HP15_2451 - ribonuclease, Rne/Rng family, at 2,590,268 to 2,591,749
_2451
Position (kb)
2586
2587
2588
2589
2590
2591 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2585.549 kb on + strand at 2585.579 kb on - strand at 2585.685 kb on - strand, within HP15_2449 at 2585.690 kb on - strand, within HP15_2449 at 2585.723 kb on - strand, within HP15_2449 at 2585.790 kb on + strand, within HP15_2449 at 2585.880 kb on + strand, within HP15_2449 at 2585.930 kb on - strand, within HP15_2449 at 2586.130 kb on - strand, within HP15_2449 at 2586.141 kb on + strand, within HP15_2449 at 2586.149 kb on - strand, within HP15_2449 at 2586.240 kb on + strand, within HP15_2449 at 2586.631 kb on - strand at 2586.764 kb on - strand at 2586.835 kb on - strand at 2586.872 kb on + strand, within HP15_2450 at 2586.938 kb on + strand, within HP15_2450 at 2586.938 kb on + strand, within HP15_2450 at 2587.035 kb on + strand, within HP15_2450 at 2587.222 kb on - strand, within HP15_2450 at 2587.363 kb on + strand, within HP15_2450 at 2587.663 kb on + strand, within HP15_2450 at 2587.688 kb on + strand, within HP15_2450 at 2587.731 kb on - strand, within HP15_2450 at 2587.733 kb on - strand, within HP15_2450 at 2587.733 kb on - strand, within HP15_2450 at 2587.774 kb on + strand, within HP15_2450 at 2587.939 kb on + strand, within HP15_2450 at 2588.053 kb on - strand, within HP15_2450 at 2588.157 kb on - strand, within HP15_2450 at 2588.249 kb on - strand, within HP15_2450 at 2588.254 kb on + strand, within HP15_2450 at 2588.316 kb on - strand, within HP15_2450 at 2588.352 kb on + strand, within HP15_2450 at 2588.372 kb on + strand, within HP15_2450 at 2588.372 kb on + strand, within HP15_2450 at 2588.372 kb on + strand, within HP15_2450 at 2588.380 kb on - strand, within HP15_2450 at 2588.380 kb on - strand, within HP15_2450 at 2588.460 kb on + strand, within HP15_2450 at 2588.463 kb on - strand, within HP15_2450 at 2588.471 kb on + strand, within HP15_2450 at 2588.566 kb on - strand, within HP15_2450 at 2588.637 kb on - strand, within HP15_2450 at 2589.334 kb on + strand, within HP15_2450 at 2589.342 kb on - strand, within HP15_2450 at 2589.482 kb on + strand, within HP15_2450 at 2589.484 kb on + strand, within HP15_2450 at 2589.557 kb on + strand, within HP15_2450 at 2589.557 kb on + strand, within HP15_2450 at 2589.668 kb on + strand, within HP15_2450 at 2589.813 kb on + strand, within HP15_2450 at 2589.813 kb on + strand, within HP15_2450 at 2589.866 kb on - strand at 2589.876 kb on - strand at 2590.243 kb on - strand at 2590.279 kb on - strand at 2590.284 kb on - strand at 2590.421 kb on + strand, within HP15_2451 at 2590.537 kb on + strand, within HP15_2451 at 2590.850 kb on - strand, within HP15_2451 at 2590.903 kb on - strand, within HP15_2451 at 2591.166 kb on - strand, within HP15_2451
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 2,585,549 + +0.2 2,585,579 - +0.1 2,585,685 - HP15_2449 0.11 +0.2 2,585,690 - HP15_2449 0.11 +0.8 2,585,723 - HP15_2449 0.15 +0.0 2,585,790 + HP15_2449 0.23 +2.1 2,585,880 + HP15_2449 0.34 -0.5 2,585,930 - HP15_2449 0.39 +0.2 2,586,130 - HP15_2449 0.63 -0.1 2,586,141 + HP15_2449 0.64 +0.1 2,586,149 - HP15_2449 0.65 -2.1 2,586,240 + HP15_2449 0.76 -1.5 2,586,631 - +0.9 2,586,764 - +0.9 2,586,835 - -1.3 2,586,872 + HP15_2450 0.11 +1.4 2,586,938 + HP15_2450 0.12 +2.2 2,586,938 + HP15_2450 0.12 -0.5 2,587,035 + HP15_2450 0.15 +2.2 2,587,222 - HP15_2450 0.20 +0.4 2,587,363 + HP15_2450 0.24 +1.1 2,587,663 + HP15_2450 0.32 +2.8 2,587,688 + HP15_2450 0.32 -0.4 2,587,731 - HP15_2450 0.34 +0.1 2,587,733 - HP15_2450 0.34 +1.4 2,587,733 - HP15_2450 0.34 +0.3 2,587,774 + HP15_2450 0.35 +0.3 2,587,939 + HP15_2450 0.39 -0.3 2,588,053 - HP15_2450 0.42 +1.2 2,588,157 - HP15_2450 0.45 +1.8 2,588,249 - HP15_2450 0.47 -0.5 2,588,254 + HP15_2450 0.47 +1.2 2,588,316 - HP15_2450 0.49 +0.5 2,588,352 + HP15_2450 0.50 -1.1 2,588,372 + HP15_2450 0.51 +2.2 2,588,372 + HP15_2450 0.51 -0.1 2,588,372 + HP15_2450 0.51 +0.5 2,588,380 - HP15_2450 0.51 +0.4 2,588,380 - HP15_2450 0.51 -0.4 2,588,460 + HP15_2450 0.53 -1.3 2,588,463 - HP15_2450 0.53 +0.9 2,588,471 + HP15_2450 0.53 +0.8 2,588,566 - HP15_2450 0.56 +2.8 2,588,637 - HP15_2450 0.58 +0.1 2,589,334 + HP15_2450 0.76 +2.7 2,589,342 - HP15_2450 0.76 +0.5 2,589,482 + HP15_2450 0.80 +0.6 2,589,484 + HP15_2450 0.80 +1.1 2,589,557 + HP15_2450 0.82 +1.0 2,589,557 + HP15_2450 0.82 -0.4 2,589,668 + HP15_2450 0.85 +1.0 2,589,813 + HP15_2450 0.89 +0.7 2,589,813 + HP15_2450 0.89 +0.9 2,589,866 - -0.9 2,589,876 - -1.9 2,590,243 - +0.5 2,590,279 - +0.4 2,590,284 - +0.9 2,590,421 + HP15_2451 0.10 +0.7 2,590,537 + HP15_2451 0.18 +1.2 2,590,850 - HP15_2451 0.39 -0.3 2,590,903 - HP15_2451 0.43 +0.4 2,591,166 - HP15_2451 0.61 -1.8
Or see this region's nucleotide sequence