Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_214 and HP15_215 are separated by 143 nucleotides HP15_215 and HP15_216 are separated by 49 nucleotides
HP15_214: HP15_214 - DNA helicase, ATP-dependent, RepA type, at 199,356 to 201,374
_214
HP15_215: HP15_215 - sensory box/GGDEF family protein, at 201,518 to 203,254
_215
HP15_216: HP15_216 - DNA damage response protein (yhgF like) <small>(from data)</small>, at 203,304 to 205,643
_216
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 201.420 kb on - strand at 201.428 kb on + strand at 201.438 kb on + strand at 201.456 kb on + strand at 201.577 kb on + strand at 201.587 kb on + strand at 201.590 kb on - strand at 201.608 kb on + strand at 201.631 kb on - strand at 201.801 kb on - strand, within HP15_215 at 201.806 kb on - strand, within HP15_215 at 201.896 kb on + strand, within HP15_215 at 201.904 kb on - strand, within HP15_215 at 202.018 kb on + strand, within HP15_215 at 202.091 kb on - strand, within HP15_215 at 202.219 kb on + strand, within HP15_215 at 202.261 kb on + strand, within HP15_215 at 202.269 kb on + strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.317 kb on - strand, within HP15_215 at 202.531 kb on + strand, within HP15_215 at 202.658 kb on - strand, within HP15_215 at 202.668 kb on + strand, within HP15_215 at 202.832 kb on - strand, within HP15_215 at 202.839 kb on + strand, within HP15_215 at 202.880 kb on - strand, within HP15_215 at 203.001 kb on - strand, within HP15_215 at 203.034 kb on - strand, within HP15_215 at 203.074 kb on + strand, within HP15_215 at 203.084 kb on + strand at 203.186 kb on + strand at 203.248 kb on + strand at 203.286 kb on + strand at 203.358 kb on - strand at 203.365 kb on - strand at 203.386 kb on - strand at 203.409 kb on + strand at 203.416 kb on + strand at 203.434 kb on - strand at 203.499 kb on - strand at 203.517 kb on - strand at 203.545 kb on + strand, within HP15_216 at 203.555 kb on + strand, within HP15_216 at 203.602 kb on + strand, within HP15_216 at 203.615 kb on + strand, within HP15_216 at 203.709 kb on + strand, within HP15_216 at 203.729 kb on - strand, within HP15_216 at 203.734 kb on - strand, within HP15_216 at 203.949 kb on + strand, within HP15_216 at 203.959 kb on + strand, within HP15_216 at 203.983 kb on + strand, within HP15_216 at 204.050 kb on + strand, within HP15_216 at 204.247 kb on - strand, within HP15_216 at 204.254 kb on + strand, within HP15_216
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 201,420 - -1.5 201,428 + +4.6 201,438 + +1.0 201,456 + +0.3 201,577 + -1.9 201,587 + -0.2 201,590 - -0.6 201,608 + -1.0 201,631 - +2.1 201,801 - HP15_215 0.16 -0.3 201,806 - HP15_215 0.17 +0.9 201,896 + HP15_215 0.22 -0.6 201,904 - HP15_215 0.22 +0.7 202,018 + HP15_215 0.29 +0.4 202,091 - HP15_215 0.33 +0.7 202,219 + HP15_215 0.40 +1.6 202,261 + HP15_215 0.43 +1.0 202,269 + HP15_215 0.43 -0.5 202,277 - HP15_215 0.44 -0.3 202,277 - HP15_215 0.44 +0.2 202,304 + HP15_215 0.45 +2.0 202,304 + HP15_215 0.45 -1.2 202,312 - HP15_215 0.46 -1.4 202,312 - HP15_215 0.46 -1.0 202,317 - HP15_215 0.46 +0.8 202,531 + HP15_215 0.58 -0.3 202,658 - HP15_215 0.66 -1.3 202,668 + HP15_215 0.66 +0.6 202,832 - HP15_215 0.76 -0.3 202,839 + HP15_215 0.76 -1.0 202,880 - HP15_215 0.78 -1.4 203,001 - HP15_215 0.85 +0.2 203,034 - HP15_215 0.87 +1.5 203,074 + HP15_215 0.90 +0.7 203,084 + +2.3 203,186 + +0.1 203,248 + -1.5 203,286 + +1.3 203,358 - -4.8 203,365 - -1.7 203,386 - +0.3 203,409 + -2.9 203,416 + -3.0 203,434 - -1.9 203,499 - -4.2 203,517 - -1.5 203,545 + HP15_216 0.10 -2.6 203,555 + HP15_216 0.11 -3.4 203,602 + HP15_216 0.13 -2.2 203,615 + HP15_216 0.13 -0.3 203,709 + HP15_216 0.17 -0.9 203,729 - HP15_216 0.18 -2.8 203,734 - HP15_216 0.18 -1.0 203,949 + HP15_216 0.28 +0.3 203,959 + HP15_216 0.28 -0.3 203,983 + HP15_216 0.29 -5.3 204,050 + HP15_216 0.32 -1.8 204,247 - HP15_216 0.40 -3.3 204,254 + HP15_216 0.41 -1.3
Or see this region's nucleotide sequence