Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_211 and HP15_212 overlap by 25 nucleotides HP15_212 and HP15_213 are separated by 146 nucleotides HP15_213 and HP15_214 are separated by 64 nucleotides HP15_214 and HP15_215 are separated by 143 nucleotides
HP15_211: HP15_211 - conserved hypothetical protein, membrane, at 198,337 to 198,675
_211
HP15_212: HP15_212 - hypothetical protein, at 198,651 to 198,788
_212
HP15_213: HP15_213 - cytochrome c5, at 198,935 to 199,291
_213
HP15_214: HP15_214 - DNA helicase, ATP-dependent, RepA type, at 199,356 to 201,374
_214
HP15_215: HP15_215 - sensory box/GGDEF family protein, at 201,518 to 203,254
_215
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 198.359 kb on - strand at 198.403 kb on + strand, within HP15_211 at 198.609 kb on - strand, within HP15_211 at 198.748 kb on - strand, within HP15_212 at 198.813 kb on + strand at 198.821 kb on - strand at 198.885 kb on - strand at 198.909 kb on + strand at 199.022 kb on + strand, within HP15_213 at 199.041 kb on + strand, within HP15_213 at 199.148 kb on + strand, within HP15_213 at 199.258 kb on - strand at 201.420 kb on - strand at 201.428 kb on + strand at 201.438 kb on + strand at 201.456 kb on + strand at 201.577 kb on + strand at 201.587 kb on + strand at 201.590 kb on - strand at 201.608 kb on + strand at 201.631 kb on - strand at 201.801 kb on - strand, within HP15_215 at 201.806 kb on - strand, within HP15_215 at 201.896 kb on + strand, within HP15_215 at 201.904 kb on - strand, within HP15_215 at 202.018 kb on + strand, within HP15_215 at 202.091 kb on - strand, within HP15_215 at 202.219 kb on + strand, within HP15_215 at 202.261 kb on + strand, within HP15_215 at 202.269 kb on + strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.317 kb on - strand, within HP15_215
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 198,359 - -1.1 198,403 + HP15_211 0.19 -0.2 198,609 - HP15_211 0.80 -0.3 198,748 - HP15_212 0.70 -1.0 198,813 + -0.4 198,821 - -0.6 198,885 - +0.1 198,909 + -2.4 199,022 + HP15_213 0.24 +0.5 199,041 + HP15_213 0.30 -1.0 199,148 + HP15_213 0.60 -0.1 199,258 - +0.1 201,420 - -1.5 201,428 + +4.6 201,438 + +1.0 201,456 + +0.3 201,577 + -1.9 201,587 + -0.2 201,590 - -0.6 201,608 + -1.0 201,631 - +2.1 201,801 - HP15_215 0.16 -0.3 201,806 - HP15_215 0.17 +0.9 201,896 + HP15_215 0.22 -0.6 201,904 - HP15_215 0.22 +0.7 202,018 + HP15_215 0.29 +0.4 202,091 - HP15_215 0.33 +0.7 202,219 + HP15_215 0.40 +1.6 202,261 + HP15_215 0.43 +1.0 202,269 + HP15_215 0.43 -0.5 202,277 - HP15_215 0.44 -0.3 202,277 - HP15_215 0.44 +0.2 202,304 + HP15_215 0.45 +2.0 202,304 + HP15_215 0.45 -1.2 202,312 - HP15_215 0.46 -1.4 202,312 - HP15_215 0.46 -1.0 202,317 - HP15_215 0.46 +0.8
Or see this region's nucleotide sequence