Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_180 and HP15_181 are separated by 11 nucleotides HP15_181 and HP15_182 are separated by 152 nucleotides HP15_182 and HP15_183 overlap by 4 nucleotides
HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747
_180
HP15_181: HP15_181 - conserved hypothetical protein, at 171,759 to 172,112
_181
HP15_182: HP15_182 - copper resistance B precursor, at 172,265 to 173,014
_182
HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771
_183
Position (kb)
171
172
173 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 170.792 kb on - strand, within HP15_180 at 171.008 kb on + strand, within HP15_180 at 171.056 kb on + strand, within HP15_180 at 171.099 kb on - strand, within HP15_180 at 171.381 kb on + strand, within HP15_180 at 171.396 kb on + strand, within HP15_180 at 171.481 kb on + strand, within HP15_180 at 171.488 kb on + strand, within HP15_180 at 171.489 kb on - strand, within HP15_180 at 171.496 kb on - strand, within HP15_180 at 171.519 kb on - strand, within HP15_180 at 171.616 kb on + strand at 171.616 kb on + strand at 171.678 kb on + strand at 171.678 kb on + strand at 171.678 kb on + strand at 171.694 kb on - strand at 171.725 kb on - strand at 171.735 kb on + strand at 171.738 kb on - strand at 171.836 kb on + strand, within HP15_181 at 171.895 kb on + strand, within HP15_181 at 171.933 kb on - strand, within HP15_181 at 171.996 kb on - strand, within HP15_181 at 171.996 kb on - strand, within HP15_181 at 172.026 kb on + strand, within HP15_181 at 172.036 kb on + strand, within HP15_181 at 172.114 kb on + strand at 172.114 kb on + strand at 172.333 kb on + strand at 172.351 kb on + strand, within HP15_182 at 172.468 kb on - strand, within HP15_182 at 172.480 kb on + strand, within HP15_182 at 172.480 kb on + strand, within HP15_182 at 172.488 kb on - strand, within HP15_182 at 172.498 kb on - strand, within HP15_182 at 172.628 kb on + strand, within HP15_182 at 172.636 kb on - strand, within HP15_182 at 172.638 kb on + strand, within HP15_182 at 172.638 kb on + strand, within HP15_182 at 172.666 kb on - strand, within HP15_182 at 172.776 kb on + strand, within HP15_182 at 172.888 kb on + strand, within HP15_182 at 172.898 kb on - strand, within HP15_182 at 173.053 kb on - strand at 173.053 kb on - strand at 173.053 kb on - strand at 173.053 kb on - strand at 173.055 kb on + strand at 173.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 170,792 - HP15_180 0.29 -0.9 171,008 + HP15_180 0.45 -0.1 171,056 + HP15_180 0.49 -0.4 171,099 - HP15_180 0.52 +0.1 171,381 + HP15_180 0.73 +0.1 171,396 + HP15_180 0.74 -1.1 171,481 + HP15_180 0.80 -0.5 171,488 + HP15_180 0.81 +1.4 171,489 - HP15_180 0.81 -3.8 171,496 - HP15_180 0.81 +0.6 171,519 - HP15_180 0.83 +0.6 171,616 + -0.6 171,616 + -0.4 171,678 + +1.1 171,678 + +2.3 171,678 + -0.6 171,694 - +0.1 171,725 - -0.0 171,735 + -1.9 171,738 - -0.1 171,836 + HP15_181 0.22 -1.4 171,895 + HP15_181 0.38 -0.9 171,933 - HP15_181 0.49 +1.3 171,996 - HP15_181 0.67 -0.3 171,996 - HP15_181 0.67 -0.6 172,026 + HP15_181 0.75 -0.1 172,036 + HP15_181 0.78 -0.9 172,114 + -2.3 172,114 + -0.2 172,333 + -0.6 172,351 + HP15_182 0.11 -0.5 172,468 - HP15_182 0.27 +1.1 172,480 + HP15_182 0.29 -1.4 172,480 + HP15_182 0.29 -0.6 172,488 - HP15_182 0.30 -0.5 172,498 - HP15_182 0.31 +2.9 172,628 + HP15_182 0.48 +0.7 172,636 - HP15_182 0.49 +1.8 172,638 + HP15_182 0.50 +0.9 172,638 + HP15_182 0.50 -0.6 172,666 - HP15_182 0.53 -1.0 172,776 + HP15_182 0.68 -0.2 172,888 + HP15_182 0.83 +2.2 172,898 - HP15_182 0.84 -0.4 173,053 - -1.8 173,053 - +1.4 173,053 - +0.9 173,053 - -2.6 173,055 + +1.3 173,086 - -0.1
Or see this region's nucleotide sequence