Strain Fitness in Marinobacter adhaerens HP15 around HP15_181

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_180 and HP15_181 are separated by 11 nucleotidesHP15_181 and HP15_182 are separated by 152 nucleotidesHP15_182 and HP15_183 overlap by 4 nucleotides HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747 _180 HP15_181: HP15_181 - conserved hypothetical protein, at 171,759 to 172,112 _181 HP15_182: HP15_182 - copper resistance B precursor, at 172,265 to 173,014 _182 HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771 _183 Position (kb) 171 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 170.792 kb on - strand, within HP15_180at 171.008 kb on + strand, within HP15_180at 171.056 kb on + strand, within HP15_180at 171.099 kb on - strand, within HP15_180at 171.381 kb on + strand, within HP15_180at 171.396 kb on + strand, within HP15_180at 171.481 kb on + strand, within HP15_180at 171.488 kb on + strand, within HP15_180at 171.489 kb on - strand, within HP15_180at 171.496 kb on - strand, within HP15_180at 171.519 kb on - strand, within HP15_180at 171.616 kb on + strandat 171.616 kb on + strandat 171.678 kb on + strandat 171.678 kb on + strandat 171.678 kb on + strandat 171.694 kb on - strandat 171.725 kb on - strandat 171.735 kb on + strandat 171.738 kb on - strandat 171.836 kb on + strand, within HP15_181at 171.895 kb on + strand, within HP15_181at 171.933 kb on - strand, within HP15_181at 171.996 kb on - strand, within HP15_181at 171.996 kb on - strand, within HP15_181at 172.026 kb on + strand, within HP15_181at 172.036 kb on + strand, within HP15_181at 172.114 kb on + strandat 172.114 kb on + strandat 172.333 kb on + strandat 172.351 kb on + strand, within HP15_182at 172.468 kb on - strand, within HP15_182at 172.480 kb on + strand, within HP15_182at 172.480 kb on + strand, within HP15_182at 172.488 kb on - strand, within HP15_182at 172.498 kb on - strand, within HP15_182at 172.628 kb on + strand, within HP15_182at 172.636 kb on - strand, within HP15_182at 172.638 kb on + strand, within HP15_182at 172.638 kb on + strand, within HP15_182at 172.666 kb on - strand, within HP15_182at 172.776 kb on + strand, within HP15_182at 172.888 kb on + strand, within HP15_182at 172.898 kb on - strand, within HP15_182at 173.053 kb on - strandat 173.053 kb on - strandat 173.053 kb on - strandat 173.053 kb on - strandat 173.055 kb on + strandat 173.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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170,792 - HP15_180 0.29 -0.9
171,008 + HP15_180 0.45 -0.1
171,056 + HP15_180 0.49 -0.4
171,099 - HP15_180 0.52 +0.1
171,381 + HP15_180 0.73 +0.1
171,396 + HP15_180 0.74 -1.1
171,481 + HP15_180 0.80 -0.5
171,488 + HP15_180 0.81 +1.4
171,489 - HP15_180 0.81 -3.8
171,496 - HP15_180 0.81 +0.6
171,519 - HP15_180 0.83 +0.6
171,616 + -0.6
171,616 + -0.4
171,678 + +1.1
171,678 + +2.3
171,678 + -0.6
171,694 - +0.1
171,725 - -0.0
171,735 + -1.9
171,738 - -0.1
171,836 + HP15_181 0.22 -1.4
171,895 + HP15_181 0.38 -0.9
171,933 - HP15_181 0.49 +1.3
171,996 - HP15_181 0.67 -0.3
171,996 - HP15_181 0.67 -0.6
172,026 + HP15_181 0.75 -0.1
172,036 + HP15_181 0.78 -0.9
172,114 + -2.3
172,114 + -0.2
172,333 + -0.6
172,351 + HP15_182 0.11 -0.5
172,468 - HP15_182 0.27 +1.1
172,480 + HP15_182 0.29 -1.4
172,480 + HP15_182 0.29 -0.6
172,488 - HP15_182 0.30 -0.5
172,498 - HP15_182 0.31 +2.9
172,628 + HP15_182 0.48 +0.7
172,636 - HP15_182 0.49 +1.8
172,638 + HP15_182 0.50 +0.9
172,638 + HP15_182 0.50 -0.6
172,666 - HP15_182 0.53 -1.0
172,776 + HP15_182 0.68 -0.2
172,888 + HP15_182 0.83 +2.2
172,898 - HP15_182 0.84 -0.4
173,053 - -1.8
173,053 - +1.4
173,053 - +0.9
173,053 - -2.6
173,055 + +1.3
173,086 - -0.1

Or see this region's nucleotide sequence